AMCG00004170 (ift172,LOC105901225,LOC107716708)


Basic Information

Item Value
gene id AMCG00004170
gene name ift172,LOC105901225,LOC107716708
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36348573 ~ 36390512 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004170
GGGGTTACCAGGGAGAGAGATGTCTGCAGTGAGCTGAACACAACACTTCCTCACTCAATTCATGTTcactgtattgatttgttttcttccgATTGTCAGTTAAGACGCAGACTCGACAGGatcttattcttttattttcttcttgccGTGTCATCAATCAGCAATGCAACTAAAACATATTAAGACTCTCCTAACTCCGCAAGATGGGGCAGCTAAAGTGACTTGCATGGCATGGGCACCGAACAATGGGAAATTCGCCGTCTGCACGGTGGACAGAGTGGTTCTGCTGTACGACGAGCAAGGGGAGAGAAGGGACAAGTTTTCTACTAAACCTGCAGATTCAAAGTATGGAAAGAAAAGCTATGTTGTCAAATCCATGGCATTTTCCCCAGATTCAACCAAAATAGCCATTGGACAAACCGACAACATCATTTATGTTTATAAAATTGGAGAGGAGtggggggaaaaaaaggtgaTCTGCAACAAATTTGTGCAGACAAGTGCTGTGATTTGTCTGCTGTGGCCTGCAGAACATGCTATTATTTTTGGAATAGCCGAAGGAAAGgTCCGCCTTGCTAATACAAAAACTAACAAGTCCTCAACGATTTATGGAACAGAGTCCTATGTGGTTTCTTTAACATCAAATGTTTCTGGAAAAGGAATTCTCTCTGGCCATGCAGATGGGACAGTAGTGCGATATTTCTTTGATGATGAAGGCTCAGGGGAATCCCAAGGGAAACTCTTGACTCACTCTTGCCCACCCTATGCCTTGGGATGGGGAGCAAACAGCATAATAGTGGCTGGGTGTGATAAGAAGATTGTGGCCTATGGAAAAGAGGGGCATGTGATCCAGACCTTTGACTACAGCCGGGATCTCTCAGAGAAGGAGTTCACTGTGGCCAGCACCAGCCCCAGTGGCCAGTCTGTGGTCATTGGAAGCTATGATCGGCTCAGGGTTTTTAACTGGAGTCCCCGCAGATCTTCTTGGGAAGAAGCTACTGCTAAGGAAATCCCCAACCTTTACACTATTACTTCGTTGGCCTGGAAGAAGGATGGCTCACGACTTTGTGCGGGAACCTTGTGTGGAGGAGTGGAACAGTTTGATTGCTGCCTGCGCAGAAGCATATATAAGAACAAATTTGAAATGACTTACGTGGGCCTAAGTCAGGTAATTGTGAAGAACCTGTCCACAGGCACACGTGTTGTGTTGAAGTCACACTACGGCTATGAAATTGATGAAGTTAAGATCATGGGAAAGGACAGATACCTAGTGGCTCATACATCGGACACTTTGCTCTTAGGAGATCTCGGATCAAACAAATTAAGTGAGGTGGCCTGGCAGGGCTCTGGAGGAAATGAGAAGtatttctttgaaaatgaaactGTGTGTATGATCTTCAATGCTGGAGAGCTGACTCTGGTAGAGTATGGAAACAATGACATCCTTGGATCTGTACGAACTGAGTTTATGAACCCTCATCTCATCAGTGTTCGactgaatgaaagaaaacagaggGGGATTGAAGACAATAAAAAGCTGGCTTATCTGATTGATCTCAAAACAATTGCTATAGTTGATCTTACTGGCGGCTTCAACTTGGGAACCATCAGCCATGACACCAAAATTGACTGGTTGGAGTTAAACGAAACTGGACACAAGCTGTTGTTTAGAGACAAGAAACTTAGGCTGCATTTGTATGACATTGAAAACAGCGTCAAGACCACAGTGTTGAGCTTTTGCTCCTATGTGCAGTGGGTGCCCGGCAGTGATGTAGTTGTCGCACAGAACAGAGGCAACCTCTGTGTCTGGTACAATATCGACAGCCCAGAGAGAGTCACCATGTTCCCCCTGAAGGGTGATATAGTGGACCTAGAGAGGAGCAATGGGAAAACAGAAGTAATTGTGACGGAGGGTGTGAACACTGTGTCCTACACTCTGGACGAGGGGCTCATTGAGTTCGGTACAGCCATTGATGATGGAGACTATTGCAGAGCGACTGCTTTCCTAGAGACGCTGGAGATGTCAACTGAAACAGAGGCCATGTGGAAGACTCTGAGCAAACTCTCGCTGGAAGCCAAACAGCTGCACATTGCAGAGAGATGTTTTGCTGCCCTGGGGGATGTATGTAAAGCTCGATTTCTGAACGAGACCAACAATATTGCAGACAAAGCAGAAAAAGAATACGGTGGTGATGGCACAGAGTATTACCAAGTGAAAGCTCGCCTTGCCATGctggaaaaaaattacaaacttgCAGAAATGTTCTATTTAGAACAGAATGCCATTGATGAAGTTATGGAAATGTATCAGGAGCTTCACATGTGGGATGATTGCATCACAGTTGCAGAAGCCAAGGGCCATCCTGAGTTGGACAACCTTAGACGGTGTTACTACCAGTGGCTCATGGAAACCAACCAGGACGAAAAGGCTGGTGAGGTGAAGGAGGGCGAGGGAGACTTCCAAGGGGCCATTAACCTTTACCTGAAGGCCGGTCTCCCTGCAAAGGCCGCCCGCTTGGTAATGAGCCGCGAAGAACTCATTGCTAACAGTGAAACCGTCAACAGGATTGCCTCTGCACTGATCAAAGGGGAGTTCTACGAAAGGGCTGGAGACCTCtttgaaaaaaacaggaattacCAGCGAGCTCTTGACTGTTACCGCAAGGAATTTGCTTTCAGGAAAGCTGTAGAACTGGCCCGCTTTGCTTTCCCTGCTGACGTTGTGAAGCTGGAAGAGGCCTGGGGAGATTACCTGGTCCAGCAGAAGCAATTGGATGCTGCTATTAACCACTACATTGAGGCAGGCTGCTCTTCAAAAGCCATTGAGGCTGCAATAGGGGCACGCCAGTGGAAGAAAGCTGTCCATATCCTAGAACTGCAGGATGATAGGTCTGCAGGGAAGTACTACTTGAAAATAGCTCAGCACTATGCTTCTGTACAAGAGTATGAGGTTGCTGAGCGCTTCTATGTTAAAGGCGACCACATTAAAGATGCCATAGATATGTACACTCAAGCCGGACAGTGGGAACAAGCTCACAAGTTAGCTGTGAAGTGCATGAGTCAGGAGGATGTGTCTGCTCTGTACATCAGCCGGGCTCAGGAGCTGGAAAAGCAGGGGAAATACAAAGAAGCTGAGAGACTCTTTTCAACCATCGATGAACCAGATCTGGCCATAACAatgtacaagaaaaacaagatgtATGATGATATGATTCGATTGGTTGCCAGATATCACAAGGACCTGTTGACAGAGACCCATCTGCATCTAGCTAAGGTGGCAGACCTCCATGAGCTGGAAGCAGAATCCAGGTTTCAGGAGGCAGAATATCACTTCCTGGAGGCCAAGGAGTGGAAAACTGCGGTCAACATGTACAGAGTCAATGACATGTGGGATGAGGCCTACAGGGTGGCAAAAGCCCATGGGGGAGCAAATGCCCACAAGCAGGTGGCATACCTGTGGGCAAAGAGTCTGGGAGGAGAGGCTGCCGTGAAGCTGCTGAACAAGTTTGGGCTGCTGGAGATGGCCATTGACTTTGCAGCAGAGAACTGCTCCTTTGACTTTGCCTTTGAGCTGGCACGACTGGCAATGAAGCACAAGATCCCTGACATCCATCTGAAGAGTGCCATGTTCCTTGAGGATGAGGGCAAATTTGCAGAGGCTGAGACCGAGTTTATCAAAGCGGGAAAACCAAAAGAAGCTGTGCTGATGTATGTCCACAACCAGGACTGGAATGGTGCCCAGAGGGTGGCAGAGGCTCATGACCCTGACAGTGTGGCAGACGTGCTGGTGGGACAGGCCAAGTGTGCCTTTGATCAGAAAGAATATCAAAAAGCAGAGGCATTTCTTCTCCGAGCTCAGAAACCTGAACTCGCCATCAAGTACTACAAAGATGCAGAGCTGTGGAGTGACGCTATGCGGATTTGCAAAGAGTATGTTCCTAATAAACTGGGAATCCTCCAAGAGGAATATGAGAAGGAGGCTGTTAAAAAGGGATCGAGAGGCTTGGAGGGTCTGGTGGAGCAGGCCCGTGAATGGGAGCAGTCCGCGGAGTATGTCAGGGCAGTGGAGTGCTATCTCAGAGTCAAAGACCCCAGCAACACCGCCCTCTCAGAGAAATGCTGGATGAAGGCTGCTGAACTGGCTATTAAGTTCTTTAATCAGGAGAAAGCAATGGATGTGATTCGTGTGGTTGGACCCCGACTCATTCAGATCCGAAAATACAGTGCGgCTGCTGAGCTTTACCTTAACCTGGACCTCATTAAAGAGGCAATAGATTCATTTATAGAAGGAGAAGAATGGAACAAAGCCAAGAGAGTGGCCAAGGAGCTTGATCCCAGgTATGAGGACTATGTGGATCAGCGATACAAAGAGCATTTGAAAAACCAAGGCAAAGTGGACTCACTTGTTGGTGTTGATGTAATGGCAGCTCTTGACATGTATGCTGAAAGAGGCCAGTGGGACAAATGCATTGAGACAGCAGCTAAACAGAATTTCAAGGTCCTTCACAAATACGTTGCCCTGTATGCCACACACCTGATCAAAGAGGGGCAGTCTGTGAAGGTCCTCAATCTGTATGTTCAGCATGGGGTTCCAGCTAACCCACAGAATTTTAATATCTACAAGCGAATGTTCCTGGATTTGCTGAGCATGGTGGGAACAGACAGTGCAGAAGCATATCGCATGTGGGCAGATCTGAGAGACGTGATGTTCATTCTGTGTGAAAATATGGTGAAGTCTGCGGAGGCCAACTCCCCAGCCCACGAGGAGTTTGAGACCATGCTGCTGATCGCACACTACTGTGCAACGCGCTCGGCAGCGAAGGGAGTCGACCAactgAACACAATAGCTGCAAAGCTTTCGATTTCTCTGCTGCGTCACACACAGCTTATTCCAGCAGACAAGGCATTTTATGAGGCAGGCCTTGCTTCGAAGgaCGTTGGTTGGGAGAACATGGCTTTCATTTTTCTAAATCGCTTCCTGGATTTGAGTGATGGAATTGATGAAGGCAATCTGGATGCTCTTGATCATACAGATTTTCAGGACACTGATATTCCCTTTGAAGTTCCTCTACCTGAAAAGCAACATGTTACCGAGGACAAGCGAGAGGAGACCCGAGACTGGGTGCTGACGGTGTCCATGGACCAGCGTGTGGAGCAGGTTCTACCGAAAGATGAGAGAGACACGTACGAGGCGTCTTTGCTGGCAGTGAATACCGGCATCCGCTCTCTCCCCTGCGTCATTACAGGCTACCCTGTACTCAGAAATAAAATTGAGTTCAAAAGACCTGGTAAGGCAGCCAACAAAGATGACTGGAATAAATTCCTGATGGCAACAAAGACGACTCACAGCCCAGAGTGTCAGGACGTTCTGAAGTTCATCAGTCAGTGGTGTGGGGGTCTGCCCAGCGCTGGCTTCTCATTCCAATGAAGCTTCCACACCACGACGCCACTGTACGTCCCTCGGCTTCAGAACGCTTACAGAGTTGTATTCTACCCATCTTCTGTCCTGCTTCCACCAAGTGTCACCAATAGGGAAACATGAAAACAACCTCTAAACTGAAGGTGTAGTGAGAGTCTCTTCCTGTCTCTAAAtagaatatgaatatttattttttattggtgtCTCtgaaaacttaattttaatatttaatgcttAATATTGTTCAACATTACACAGCAGCAAAATTAAATCTATATCATATACATCTTGTAGTGTGTGCCTCCAAGCCTTGCTCTCTAGTTATTTTGTAACCTTGAGTGTTGTGTAGTCACTGTCTGCCCAGCCCAGCACAACCAAAAGTGATGTTTCGACTACTGTAATTTCATCAGAAAATACCAACAGCACTAACCCCCCATAATTTGAGCAGTTGACTGAAGTGACCAGCGAGAACCTGTACTGCAACACCTACATGCTTTTAgttgtttattagttttatttttaattaatccctTGGCTAGAATACTGTTCAGTTCACCAAGGCTGAAGGGTTAGTTAGATAAGAGTGATCTCAAGTAGCTAATCAAAACTCTGTCCCCATGGTGATTCATTCAAGCAGgaaaaagtgttttttgctTTGGTTAAAAAATATCTTTATCCCCTCTAAACAAAACCAGGTAGAGAAGTCTGTTACAAAAGCCTTGTGATTCACCcattgggaaaaaataataaattagaatGCAGTTAATGTtcattacacacaaacatatgcaCCTACacaaaatagatataaatagatatacatttttatgtaatttaccTTCAATTACTCATATGTGATTCAGagaatattgatttaatgtgtagaatcaattgtatatttatattacctataaatgaatattaaatgaaaacacca

Function

symbol description
ift172 Acts upstream of or within several processes, including animal organ development; photoreceptor cell maintenance; and regulation of TOR signaling. Predicted to be located in cilium. Predicted to be part of intraciliary transport particle B. Predicted to be active in axoneme and ciliary basal body. Used to study cystic kidney disease. Human ortholog(s) of this gene implicated in retinitis pigmentosa 71 and short-rib thoracic dysplasia 10 with or without polydactyly. Orthologous to human IFT172 (intraflagellar transport 172).

NR:

description
PREDICTED: intraflagellar transport protein 172 homolog

GO:

id name namespace
GO:0045494 photoreceptor cell maintenance biological_process
GO:0048793 pronephros development biological_process
GO:0032006 regulation of TOR signaling biological_process
GO:0005929 cilium cellular_component

KEGG:

id description
K19676 IFT172; intraflagellar transport protein 172

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004170 True 6356 mRNA 0.46 48 36348573 36390512

Neighbor

gene id symbol gene type direction distance location
AMCG00004166 NA coding upstream 95675 36237806 ~ 36252898 (+)
AMCG00004164 si:ch211-243j20.2,LOC108429346,LOC107676254,LOC108279217,LOC107602209,LOC103363074 coding upstream 136625 36187493 ~ 36211948 (+)
AMCG00004165 NA coding upstream 190024 36134006 ~ 36158549 (+)
AMCG00004159 NA coding upstream 219613 36114501 ~ 36128960 (+)
AMCG00004161 LOC107558762,LOC108441130,LOC106607809,LOC105897019,LOC107727350,LOC101885478,LOC103026919 coding upstream 274952 36067580 ~ 36073621 (+)
AMCG00004173 msra,LOC106571446 coding downstream 64479 36454991 ~ 36469024 (+)
AMCG00004174 NA coding downstream 111314 36501826 ~ 36502116 (+)
AMCG00004176 slc25a27,LOC107553473 coding downstream 273290 36663802 ~ 36669648 (+)
AMCG00004180 NA coding downstream 352115 36742627 ~ 36746065 (+)
AMCG00004186 slc5a6,LOC107601523,LOC107690043,LOC103362495 coding downstream 358344 36748856 ~ 36765206 (+)
G6102 NA non-coding upstream 182703 36161606 ~ 36165870 (+)
G6067 NA non-coding upstream 528090 35820255 ~ 35820483 (+)
G6007 NA non-coding upstream 881918 35465862 ~ 35466655 (+)
G6002 NA non-coding upstream 892686 35455676 ~ 35455887 (+)
G5914 NA non-coding upstream 1041624 35301103 ~ 35306949 (+)
G6224 NA non-coding downstream 105328 36495840 ~ 36520594 (+)
G6225 NA non-coding downstream 136156 36526668 ~ 36539067 (+)
G6240 NA non-coding downstream 163392 36553904 ~ 36555108 (+)
G6242 NA non-coding downstream 165594 36556106 ~ 36557331 (+)
G6247 NA non-coding downstream 175058 36565570 ~ 36593153 (+)
AMCG00004167 NA other upstream 70339 36261788 ~ 36278234 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other upstream 303291 36027279 ~ 36045282 (+)
AMCG00004158 NA other upstream 582393 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 1478253 34852863 ~ 34870320 (+)
G5642 NA other upstream 3217387 33130120 ~ 33131186 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 297118 36687630 ~ 36697885 (+)
G6314 NA other downstream 383489 36774001 ~ 36774523 (+)
G6328 NA other downstream 471035 36861547 ~ 36891746 (+)
G6369 NA other downstream 608845 36999357 ~ 37000158 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 1442111 37832623 ~ 37847720 (+)

Expression


Co-expression Network