AMCG00004176 (slc25a27,LOC107553473)


Basic Information

Item Value
gene id AMCG00004176
gene name slc25a27,LOC107553473
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36663802 ~ 36669648 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004176
GCTGTGCCTTTTAAACTACAACTTCTACGACAGCACTTCCTGGTCGTGAAACGCACTGCATGCCCGGGGATGTAAAGGTCAGTGCCAGTTAAGGTTCTGTGCGGTTAAGCATGCAGAGGCAGACggtaaatgtgttgtttctgcAGCACAAGGAGGGCTCGGACAGCATTTGTGTCTTCGTTGTCAAAGCCTGGTCTGATCGGAGCGATTGCGCGCAGTGTGTGCTGAGCGAGTTGCAGACGCTGCGGGTTTCTGCTGGACTTACATTGCAATGGTGCTGTCAACTGAAGCAGAAGAGTCACGTCTTACCGCTAAGTGGCCTCGGATGACAACGTTCATTTTGTCTGGTGTTGCGGCTTCTGTGGCTGAAATAGTTACTTTCCCACTTGACCTGACCAAGACACGGCTGCAGATCCAAGGCGAGGCTGCGCTCCGTCATCATGGGGACGGGGGTGGCAGGATGGCGTCGCACCGGGGCATGTTCCGCACGGCGGTGGGGATCGTAGGAGAAGAAGGCCTGCTGAAACTGTGGCAGGGTGCCACTCCTGCCATCTACAGACACATAGTGTATTCTGGCGTCCGGATGGTTGCATATGAGCACATTCGAGACTCAGTGCTGGGCAGAAATGAAGATGCCAGCTTTCCACTTTGGAAAGCTGTGCTGGGAAGCATGATGGCTGGGGCCATTGGGCAGTTTGTCGCCAGCCCCACAGACCTGGTAAAGGTGCAGATGCAGATGGAGGGGCGACGCAGACTGGAGGGCAAACCACCCCGAGTATGTGGAGTTCCCCACGCTTTTATGAAAATCATTACGGAGGGAGGAATTCGTGGGCTGTGGGCAGGATGGGTGCCAAACGTACAGAGGGCAGCTCTCGTAAATTTAGGAGATCTTGCTACCTATGACACCGTAAAGCACTTTCTACTGAGAAATACAGCCCTAGATGACAGCTGCCTGTGTCACGGATTGTCAAGCATATGTTCAGGACTGGTCGCAGctacattgggaacccctgctgaTGTCATTAAAACTCGAATCATGAACCAGCCTAGAGACTTTCATGGCAGGGGTTTATTGTACAGATCTTCTGTTGACTGCCTCATACAGTCAGTGAGAGGGGAGGGATTTATGTCTTTGTACAAAGGCTTCCTGCCAACCTGGATGAGAAtggcCCCCTGGTCCATGACATTCTGGCTCACATTTGAGCAAATCAGAAGAAGGACTGGCGTCACCTCCTTTTAGATTCTAGTTTTGTATTGGGAACGCTGTGGTTTTGCATTAAGCTTTAACTTTACCACAGGCACTTCCACaattcttgtgttttttatgcTGCTGTTTCactgaaatggaaagaaagagaaacaccTTTGAAACAGGTCAATCAGTACTGTACACCAGCCCAGCAACCCAGTGTGTcacatttatgtatacattgattccacccccccacctcatATGCTTAGTGTCTCTACATCTAGCATTCCTTGGTGTTCTGcagttatatattgtattgtacatttacCGTTCAGTGCCTGTTCTCTGCAAGTAatttaatatgtgttttctgcagtttttttaatttattttactatttcaACATATTATAAGTTGTATTTATGTACACTAGCAATctttgtatataataaaatattaaatatgtcagAG

Function

symbol description
slc25a27 Predicted to be involved in response to cold. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including Kupffer's vesicle; brain; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human SLC25A27 (solute carrier family 25 member 27).

NR:

description
PREDICTED: mitochondrial uncoupling protein 4 isoform X2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15112 SLC25A27, UCP4; solute carrier family 25 (mitochondrial uncoupling protein), member 27

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004176 True 1663 mRNA 0.48 9 36663802 36669648

Neighbor

gene id symbol gene type direction distance location
AMCG00004174 NA coding upstream 161686 36501826 ~ 36502116 (+)
AMCG00004173 msra,LOC106571446 coding upstream 194778 36454991 ~ 36469024 (+)
AMCG00004170 ift172,LOC105901225,LOC107716708 coding upstream 273290 36348573 ~ 36390512 (+)
AMCG00004166 NA coding upstream 410904 36237806 ~ 36252898 (+)
AMCG00004164 si:ch211-243j20.2,LOC108429346,LOC107676254,LOC108279217,LOC107602209,LOC103363074 coding upstream 451854 36187493 ~ 36211948 (+)
AMCG00004180 NA coding downstream 72979 36742627 ~ 36746065 (+)
AMCG00004186 slc5a6,LOC107601523,LOC107690043,LOC103362495 coding downstream 79208 36748856 ~ 36765206 (+)
AMCG00004187 enah,LOC107553420,LOC102788251 coding downstream 120786 36790434 ~ 36873869 (+)
AMCG00004192 NA coding downstream 214710 36884358 ~ 36904094 (+)
AMCG00004191 NA coding downstream 242998 36912646 ~ 36918990 (+)
G6252 NA non-coding upstream 20100 36639660 ~ 36643702 (+)
G6247 NA non-coding upstream 70649 36565570 ~ 36593153 (+)
G6242 NA non-coding upstream 106471 36556106 ~ 36557331 (+)
G6240 NA non-coding upstream 108694 36553904 ~ 36555108 (+)
G6225 NA non-coding upstream 124735 36526668 ~ 36539067 (+)
G6271 NA non-coding downstream 28448 36698096 ~ 36698298 (+)
G6272 NA non-coding downstream 29267 36698915 ~ 36700145 (+)
G6273 NA non-coding downstream 31439 36701087 ~ 36701451 (+)
G6274 NA non-coding downstream 32565 36702213 ~ 36702449 (+)
G6275 NA non-coding downstream 33057 36702705 ~ 36702968 (+)
AMCG00004167 NA other upstream 385568 36261788 ~ 36278234 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other upstream 618520 36027279 ~ 36045282 (+)
AMCG00004158 NA other upstream 897622 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 1793482 34852863 ~ 34870320 (+)
G5642 NA other upstream 3532616 33130120 ~ 33131186 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 17982 36687630 ~ 36697885 (+)
G6314 NA other downstream 104353 36774001 ~ 36774523 (+)
G6328 NA other downstream 191899 36861547 ~ 36891746 (+)
G6369 NA other downstream 329709 36999357 ~ 37000158 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 1162975 37832623 ~ 37847720 (+)

Expression


Co-expression Network