AMCG00004180


Basic Information

Item Value
gene id AMCG00004180
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36742627 ~ 36746065 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004180
ATGGCCGAATCAGAAGCAAAGAAGAAGATCACATTGGTTCCTGAGAACCTCCTAAAGAGGAGGAAGGCCTACCAGGCCATCAAAGCCACAGAGGCCAAGCGTGCTTTGTTGGAGAAGAGAAAGGTACAGCGAGGCCGACCCCTGAAGTTCAAGCGTTTAGAGGATTTCCTGTGGGAGAGCCGGCGGAAGCACCGTGATGAGACCCGGCTGAGGAGAACCAGCCATCGGCCTGCCCCTGTCCCCCAGCCTGGCAAAACGCGCCTGGCCTTTGCAGTACGCATCAGACAGATTAAGGGTGTCAGCCTCCATGTGCAGAAGGTGGTCCAGATGCTACGCCTTAGAAAGATCTTCAGTGGCGCCTTTGTTAAAATCAACAAGACATCCCTGCGCATGCTGAAGACTGTGGAGCCGTATGTGGCTTGGGGCTACCCGAATCTGAAATCTGTGCGGGAGTTGATCCTGAAGAGAGGACAGGCGAAGATCAACAATCGCAGAGTCCCTCTGACAGACAACACCATCATTGAGCAGCACATGGGCAATCACGGGATTATCTGCCTGGAGGACTTGATCCACGAAATCTACTCTGTTGGGCCACATTTCAGACAAGCCAATGGTTTCATCTGGCCTTTCCACCTGTCTGTGGCCCGACACGCTGCCAAGGACAAGGCCGGTCTGCTCCGGGAGATCGGGGATCCAGGGCCCAGAGCAGAGGACATCAACAGAATAATCAGGCAACTCAACTGA

Function

GO:

id name namespace
GO:0005840 ribosome cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004180 True 744 mRNA 0.54 6 36742627 36746065

Neighbor

gene id symbol gene type direction distance location
AMCG00004176 slc25a27,LOC107553473 coding upstream 72979 36663802 ~ 36669648 (+)
AMCG00004174 NA coding upstream 240511 36501826 ~ 36502116 (+)
AMCG00004173 msra,LOC106571446 coding upstream 273603 36454991 ~ 36469024 (+)
AMCG00004170 ift172,LOC105901225,LOC107716708 coding upstream 352115 36348573 ~ 36390512 (+)
AMCG00004166 NA coding upstream 489729 36237806 ~ 36252898 (+)
AMCG00004186 slc5a6,LOC107601523,LOC107690043,LOC103362495 coding downstream 2791 36748856 ~ 36765206 (+)
AMCG00004187 enah,LOC107553420,LOC102788251 coding downstream 44369 36790434 ~ 36873869 (+)
AMCG00004192 NA coding downstream 138293 36884358 ~ 36904094 (+)
AMCG00004191 NA coding downstream 166581 36912646 ~ 36918990 (+)
AMCG00004190 NA coding downstream 190839 36936904 ~ 36939547 (+)
G6277 NA non-coding upstream 35192 36705670 ~ 36707435 (+)
G6276 NA non-coding upstream 37868 36704508 ~ 36704759 (+)
G6275 NA non-coding upstream 39659 36702705 ~ 36702968 (+)
G6274 NA non-coding upstream 40178 36702213 ~ 36702449 (+)
G6273 NA non-coding upstream 41176 36701087 ~ 36701451 (+)
G6310 NA non-coding downstream 21672 36767737 ~ 36768023 (+)
G6315 NA non-coding downstream 28920 36774985 ~ 36776982 (+)
G6316 NA non-coding downstream 31064 36777129 ~ 36777523 (+)
G6317 NA non-coding downstream 31869 36777934 ~ 36778165 (+)
G6318 NA non-coding downstream 32303 36778368 ~ 36778577 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 44742 36687630 ~ 36697885 (+)
AMCG00004167 NA other upstream 464393 36261788 ~ 36278234 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other upstream 697345 36027279 ~ 36045282 (+)
AMCG00004158 NA other upstream 976447 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 1872307 34852863 ~ 34870320 (+)
G6314 NA other downstream 27936 36774001 ~ 36774523 (+)
G6328 NA other downstream 115482 36861547 ~ 36891746 (+)
G6369 NA other downstream 253292 36999357 ~ 37000158 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 1086558 37832623 ~ 37847720 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 3580345 40326410 ~ 40341235 (+)

Expression


Co-expression Network