AMCG00004186 (slc5a6,LOC107601523,LOC107690043,LOC103362495)


Basic Information

Item Value
gene id AMCG00004186
gene name slc5a6,LOC107601523,LOC107690043,LOC103362495
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36748856 ~ 36765206 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004186
CAGAGCTAGCGCCAGCACCGCGCAGACCGTCAGTCCACACAGTCGCTGCAGAACTACGGCAGGGTACCACCCAGCCCGTATCCTGGGCCTGAGACCCTGATGAGAGATCTGTGGAGCTGTCCCTGAGTGTTTGTGAGGCAGGCTGCCCTGCAGAGGGTGCCCTGGGCCCTGGCAGCCATGGTGGAGATGAAATTCTCCCTGGTGGACTATGTGATTTTTGCACTACTGCTCCTGCTGTCCACGGGGATCGGGCTGTTTTATGCCTTCTCGGGGGGGCGCCAGCGCACCACACAAGAGTTCCTGCTGGCGGACCGCAGTATGAGCTGCCTCCCCGTCGCCCTCTCCCTGCTAGCCACCTTCCAGTCCGCGGTGGCCATCTTGGGTGTGCCTGCGGAGATCTACTCCGGGGGGACACAGTACTGGTTCCTGGGCACCTCTTATGTGCTGGGGCTGCTGATTCCTGCTCACATCTTCATCCCAGTCTTTTACCGTCTGCGTCTCACCAGCGCATACCAGtaTCTGGAGCTGCGTTTCGGCAAAACCGTAAAGATCTGTGGGACTGTGACCTTTATCTTTCAGATGGTGATCTATATGGGTGTGGTGCTGTATGCTCCTGCTCTGGCTCTCAATGCAGTTACGGGATTTGACCTTTGGGGGGCAGTGATGGCCATTGGGCTCGTCTGTACCATTTACACAACACTGGGCGGGTTGAAAGCAGTGATTTGGACAGACGTGTTCCAGACGGTGGTGATGTTCGTGGGGCAGCTGGCGGTGATCGTGGTGGGGGCGCACCAGGCTGGGGGCATGGCTGCTGTGTGGCAGAAAGCACAAGAGGGCGGCCGCATCTCTGGGCTGGACCTGAACCCGGACCCTTTTGAGCGGCACACTTTCTGGACGCTGGGCCTGGGGGGGGTGTTCATGATGCTGGCTCTGTACGGAGTGAACCAGGCACAGGTCCAGAGATACCTCAGCTCCCGCACCGAGAAGGAGGCCATCATgtccTGCTACATGGTTTTCCCCTGCCAGCAGATTGTGCTGACTCTGGGCTGTTTGATGGGGCTGGTGATGTTTGCCCGTTATGGTGAGGACAGCCCCCTGAAAAATGGATACGTTAAATCGGCAGACCAGATGGTGCTCTACTTTGTGATGGATGTGCTTAAGGACCTTCCTGGACTGCCAGGACTGTTTGTAGCTTGTCTGTTCAGTGGAGCTCTCAGCACAATTTCCTCAGCCTTTAATTCTCTGGCCACTGTGACGCTGGAGGACCTGATCAAGCCCTACTTCCCAGACATGCCCGAGTCCAGGGCCACTTTGCTGTCAAAAGGCCTCGCTCTGGGCTATGGGCTTGTCTGCTTGGGAATGGCCTACATAGCATCACTGATGGGCTCAGTACTGCAGGCAGCACTCAGCATCTTCGGGATGGTTGGGGGTCCCCTCCTCGGGGTCTTCTGTCTGGGAATGTTCTTCCCCTGGGCTAACTCCACTGGTGCTCTCACTGGCTTGCTGGCAGGCTTAGTCATGGCTTTCTGGATTGGGATAGGGAGCATAGTCTCTCGCATGGGTGCCTCTGCCCCTCTGCCACATCTCAACACCACCGCTGTCCCAAACACCGGGAACATGACCACTGTGGCCATGACGACACTAATCACTGCCATCACTTCAAGGCCCACAGGACTGCAGCGCTTCTACTCGCTGTCGTACATGTGGTACAGTGCGCACAACTCCACCACGGTGGTTGTGGTGGGGCTGATAGTCAGTCTCCTTACAGGTCCCACCAAGGAGAAGGATGTAACCCCGGGCACAGTGTTCCCTGTGCTGGGCACACTCCTGTTCTTCCTGCCAGAGCGATACAGAGAGAAGCTGTGCTGCGTCACTCCACTGGACTACAGGcCCAAGGAGCCTGGTGCCCAGCAGCGCCTCATGCCACACAAGGAGAGCAATGGCAGCACGTTCCCCACCGaggagggaaagggggaggaCGAGGAGTCGGAGAGCCCCCCAGTCGTGAACCGCTACATTCACATTGTGCACGAGACGTCCCTGTGACCCAGCCCTGCGCCTCCCTGGCCGGCCCTCTCGCAGACTGTGGCGGGAGACTGGAAAAGACACAGCCGTGCATGGTGGGGCGATACCCAAATGTAGTGCTTAGGTTTCCAGCAGGGATACTCAAACAGCCGGGGAAAATTGAGCTTGTGTGTCAGATGAGTAGGGTGAGAACGACTACACGTGAATCAGGATTTTTACCGTGTCAGATACAGTCCAAGTAAGGCAGTTGGTGTCCTGTACCGACTTCCTCAGaggaggattttgtttttcaaggttTAGCTGTAGTGCTTTATTCTGCAATACACTGGCCATGAAGGCCTGAAGGATCATGATTCATGAAGAACAGTTGTTTACTCCCTTTTATATGACACAAACTCCTGCCGTGCTGTTTTGTTCAAAGCATCCCATTTAGAAGTGGCTTTAAAATTCCACATATACAAACATCCCTTTAATcccagctttttattttctggcaaGGAAAATTTAGGAGACTGcctaattaaaacagatttttattaaaattttataaggcaaacagaaaatgcattataGACACATTTTTGTATGGCATTGTTCAGGTGATTGTGATATACACACCAAATGTTAATTCCATTTCCATTGCcatggaaaatattttgattcCAAATATTTAGAAGTAGTTAACACACGACCTGTTTCCTGTGCTGTCCATGGCACGGTGAGTCACAAGACCACTTATGGGTTTGTTCTGCCTTTATAAGCTGGGGTGATGCCAAACCCACTTCTAAGTATTTTATCCACTGCCATTGTATACCATGAGACCTTTATcaacatttaacacacacacctttcAAGCAGACATTATTGGATAGTCCTAGCAGACACTAGTTTCAAACTCCCAGGCAGGTTCTGTAAAAGTTTCAGCCACattagatttttaaattttagttttgttttttgttagctTTGAGCTTCTTGAATGACCAAAAGCATCTTGAAGGATTACCGTGTAACATCTTCAAAGAAGTGGGTCGGTAGCTTGACGTGTACCAATAATCCATTGTGCTGAGAAGTGCCTCCTACTCCCAGTCCTGAATGTGTTGTCTCTTAATGTCCATTGGTGTCTTCTGCTCTTGGTTTATAAGCCGAATCTGAAGAAATGTTTTAGGCTCTCGGGGTTTCCCGCAGCTCTATTAATCGGTCCTGCCTGGCCACACAAATTtaagtgtgaaaaaacaaacaaaaccaaaaaagttTGAAATGCAAGCGCTCTTGCTTTTGCTCCACCCCCTGCTCTCCTTCACTACGGTAAAACCACCCCCGTAGATTAttaatctacacacacacacagtcttctCCCCCGTCAGCAAATCTGAAACAGTCTGCCATGCCTATGCAAAATTCTGCGGGAAACCCTGTCTACAACGTTGTCTTTTTTGGCATgaaattcaaacacacaaacctttGTCTTGTCTATTGGGAACaggatatcttttttttttttggcgaATTAGTTAGATAATTTGACAGATGACCCTAACAGCAACAGTAAAATAATCTTCGCTGTACTCCTGTATCACTAAGCCTCTGCAGAAGTGTGGCCTTTACGATTGGTAGTAAAAATGTGTGCACTATCCTTTCATATTCCTGATCTTGCTCCAGAGCTCATCTCAAGaagtgcgtgtcagtgtggacGTGTGTTTGCGTTACTCCTGCGCTTCTGAGTTCATTGCATATCGTTCAATTCAGATCagttgttttactgatcttattCTGGGATATTTATTATTGTGGAGATGGTTTGATTTGGATCGAAGGCCCAATAGAGGCATTTTTCCTCTATGGGTTGGTCCCCATGTAGTGTGACTGTGCTGTTGGCTTTGTTGTTTATTGGTGTCCTACACTGGATTGGTGGTGTGTGTTCCagtactgtgtgtttgtgttggtgcTCTGTGACTTGCTTTGTTTGTTATCCAGACCCTGTTCCCCAAGCTTTCTGTACTTCCTGCTTAAAAATATCCAAAACAATTCCTACAGTAAAGCTTTCCTCCAATACTCACAGCAGAGTAAAGAAGAATGAAAAGGCATGAATAGCAAAATGTCACAATTACAGATGGCTATGGCTGTGCTGGGTCCACCTGCACTGAGTCTGTCTGTTCTTTTCTGATTTGACACATTTCAATTGAACAGTTTCTTGAATCACAGGTTATGCTCTGCTGTGTATAATCTTGTGCTTTCTGTGCCAAAGGAATTGCCAGTAAAAAAATGACCAGCTATTGTCATCTTGTACACCTCATCTCATTTCACTTAAATCTTTTAAATCCCATCAGATATCAATTGGTTGTTTTAACTTCTAATAAGCAGGGGAGAAattatgtactttttatttaagcCTAAGTGAAGTTCCTGATGTTTTGTCTGTTTACAATGTGTGTCTACCTTGGATAtctcaagaaaacaaatgtgaaagGCACCTGCCtaaatttgttttcatcaggGGCACTCTGGAGACCATACATGCATCAGGAccttcatttaaaattgtaacctttaattgaaatgtcttgAAGGAGAAATTACTTGGGAAGGCTGAACTCAACAGACCCCTACAGTCAACATATGTAATGAGAACTAATGTTTTTCTTAACCTAATGAAAATGCTGATATCtgctttatgttttatattgaatagAATAAGTATTTACTGCTGGAAGAAAGGACcagttttataaattatttcgTTTTCCTTTGTACCTGAGATGACTTGAAGAGTTAAGATAATTTGCCCAGTGAacagttttcaattattatCATTGTGAACATAGGTaggtgtacattttttttatataatacaatctaAGCACAGTGGCTttgaatcatttcaaatgttcagaaagtgtcTGATATTTGCACTAGGGAAAGGTACTACAGAACGCCAAGGCAAGGCTGCCGTGCGGTGTATGCCTGCATAGAGCTTAAGGTAAGAGGCAAGAGAAAGAAGTCTCGCATGCATAAGCAAATGCATTCAATGAAGGTTGATATGTATCAGTGTGTATGctatctgtgtatatatgtatgattgtaaagcatttcataaattcataaaatgcatatttaagaGCTCATGGGGATGCATACTATAGCAAGGGCGATTTATGAACTGCTCCCTGTGACTGCCCGTTCCGAGAGTCCCGTCAGCCAGCGTCTTAACACCCATCGGTTACCATTTGAAAGCGCTACGAAACCAAGGCTCCCTCCTACTACGCATTCCCACAACAACTGTGCGGTAGCTTTGCTTAGTTCTTGTCCTGCATGCTGCACAAGTGCCTCTGTTTGACTGTGCTGCTTTGTAGTCGAATGAAAGCCTTTTTTTCCAGATCTAGCTGAATTCTGAGCTCTATTATTCCAGTTGTGAGCTGCAGGGCTCCTCCTGGGGAGCAGGTTTGAGCTGCTGTGCTCACCCTCAGCTTGAAGTGTATGACTGGATTTCATTATTGCTGTGGTACAGCAGCTAATGTGACATTGAGAGACCCAATACTCTGGCTCATTCCACATAGTCAACCAGTGAGAATTGTGCTGTATAATATGCGCTAATCAGTATGCCAAATTCATGACTAAACTTATTCCCCTTCAACTTCAACCTAActtgcttttaaaaagtaagAGATCAGTATGTGTGAGTACTTATGTTTCTAAAGATATGgtctaataaaatgttttgtctgtctgtttccaatctttgtttcctgttttttgtctttgttcaatttcccattttcattaaattcatatattttttttttttcatctttgaaATCTCACATTTGTATTAGATCATTGCACCACTATTAACTCTGATGCAAAATCGGCTGCTTTTATAGTTGACGATTGAGATTAATTGCAAAGCCAATCTGCATATTGATGCCACACTTTAatcattcattttagttttaaacacCTCAGTTTTTTCAAAATCTAATCAAAATGTACTTTACATTCCTGACCTACATTTAAAGGTGAATTCAATTTAATAACTTACGAAATTCCATTGGACGATGGACGTACAGTATATTCCTACAGTACAAACAGTATTGCAGCGAATGTCCTGTGCTATATTTTCTGAATTGGG

Function

symbol description
slc5a6 Enables biotin transmembrane transporter activity and pantothenate transmembrane transporter activity. Involved in anion transmembrane transport and transport across blood-brain barrier. Located in plasma membrane.

NR:

description
PREDICTED: sodium-dependent multivitamin transporter

GO: NA

KEGG:

id description
K14386 SLC5A6, SMVT; solute carrier family 5 (sodium-dependent multivitamin transporter), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004186 True 6154 mRNA 0.46 16 36748856 36765206

Neighbor

gene id symbol gene type direction distance location
AMCG00004180 NA coding upstream 2791 36742627 ~ 36746065 (+)
AMCG00004176 slc25a27,LOC107553473 coding upstream 79208 36663802 ~ 36669648 (+)
AMCG00004174 NA coding upstream 246740 36501826 ~ 36502116 (+)
AMCG00004173 msra,LOC106571446 coding upstream 279832 36454991 ~ 36469024 (+)
AMCG00004170 ift172,LOC105901225,LOC107716708 coding upstream 358344 36348573 ~ 36390512 (+)
AMCG00004187 enah,LOC107553420,LOC102788251 coding downstream 25228 36790434 ~ 36873869 (+)
AMCG00004192 NA coding downstream 119152 36884358 ~ 36904094 (+)
AMCG00004191 NA coding downstream 147440 36912646 ~ 36918990 (+)
AMCG00004190 NA coding downstream 171698 36936904 ~ 36939547 (+)
AMCG00004193 LOC104951820 coding downstream 433717 37198923 ~ 37231208 (+)
G6277 NA non-coding upstream 41421 36705670 ~ 36707435 (+)
G6276 NA non-coding upstream 44097 36704508 ~ 36704759 (+)
G6275 NA non-coding upstream 45888 36702705 ~ 36702968 (+)
G6274 NA non-coding upstream 46407 36702213 ~ 36702449 (+)
G6273 NA non-coding upstream 47405 36701087 ~ 36701451 (+)
G6310 NA non-coding downstream 2531 36767737 ~ 36768023 (+)
G6315 NA non-coding downstream 9779 36774985 ~ 36776982 (+)
G6316 NA non-coding downstream 11923 36777129 ~ 36777523 (+)
G6317 NA non-coding downstream 12728 36777934 ~ 36778165 (+)
G6318 NA non-coding downstream 13162 36778368 ~ 36778577 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 50971 36687630 ~ 36697885 (+)
AMCG00004167 NA other upstream 470622 36261788 ~ 36278234 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other upstream 703574 36027279 ~ 36045282 (+)
AMCG00004158 NA other upstream 982676 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 1878536 34852863 ~ 34870320 (+)
G6314 NA other downstream 8795 36774001 ~ 36774523 (+)
G6328 NA other downstream 96341 36861547 ~ 36891746 (+)
G6369 NA other downstream 234151 36999357 ~ 37000158 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 1067417 37832623 ~ 37847720 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 3561204 40326410 ~ 40341235 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018258 slc5a6a coding NC_007131.7 CM002904.2 36646761 ~ 36671660 (-)
grasscarp (Ctenopharyngodon idella) CI01000029_00653876_00662303 SLC5A6A, SLC5A6 coding CI01000029 null 653614 ~ 662874 (-)