AMCG00004193 (LOC104951820)


Basic Information

Item Value
gene id AMCG00004193
gene name LOC104951820
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37198923 ~ 37231208 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004193
ATGGACTCGGAGAAGAAGGAACTACATTTCCAGAGAGACCTAGGACTTCCCCTGGAGTTACTGGAAGTAAAACGGGGCAAAGGAGCCACATGTCACATGTGCTTCATAGGCAGAAACGGGGCATCTGCAAGCTGGATCTGGAGGAGGATGCTGCGGCAAGTGATACACAGAGGGCTCAAATCGTCTTTCTACTGGCTCGGCTTATTTGTTAGCAGGCATCCggtttttttcctcactgttcCCGCAGTCTTGACTATCATCTTCGGATCCACCGTCCTCAGCAGGTTTAAGACGGAAACCGACCTGGAGATACTGGTTGCTCCGACTCACAGCCTGGCTAAAATAGAGAGGACACTGGCGAACAGTCTGTTCCCCATCGATCAGTCCAAACACAAGCTGTATTCAGACCTGCACACGCCGGGGAGATATGGCAGGCTGATCCTGCTCTCGAAATCGGGGGCGAACATCCTGGAACTGGCCGATCAGGTCTTGCAGGTCCACCGCGCGGTGCTGGATCTGAGGgatGGAAGGATCTCTTTCATTGGCCACCAGCTGGGGGGGGTGACCCTTGTCCCAAACAGCAGAGATCATCAGGTGAAGTTTGCCCGAGCTGTTCAGATCACATACTACCTCCACAACTATGGCTCTGCCTCCCAGGATGTCATTTCTGAGAAGTGGGAAAGTGAGTTTTGCACACTTATACACAGGCTTGCTCCAGTCAATGAACACCTTTACATCCAATCCCTTACCTCTTTCAGTCTCTGGAGAGACTTTCACAAAACAGGAGTGCTGGCGAAGAGTGAAGTGCTGGTCAGTTTGGTGCTAGTGCTCCTGGCAGCCACCATCTCCAGCTCCATGAGGGATTGCCTGCGAGGGAAGCCCTTTCTCGGGTTGCTGGGAGTTCTCACTATCTGTATAGCCAATGTTACTGCAGCAGggatatttttcatttcagatggAAAGTATAATTCTACACTTCTGGGAATCCCCTTCTTTGCAATGGAAGAGTGTCGCTCGGCTGAGCAGTTCCCATTGCGGGACAGACACTGCAGATCCCTGCACTCGACATGGACGACTTCGAAATCCATCGACGTCAACACATCAATATCGACCTCGAGATCCATCGACATCAACACATCGACCTCGAGATCCATCGACATCGACACATCCACGTCGACACATCAATATTGA

Function

NR:

description
PREDICTED: patched domain-containing protein 1-like, partial

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004193 True 1191 mRNA 0.51 4 37198923 37231208

Neighbor

gene id symbol gene type direction distance location
AMCG00004190 NA coding upstream 259376 36936904 ~ 36939547 (+)
AMCG00004191 NA coding upstream 279933 36912646 ~ 36918990 (+)
AMCG00004192 NA coding upstream 294829 36884358 ~ 36904094 (+)
AMCG00004187 enah,LOC107553420,LOC102788251 coding upstream 325054 36790434 ~ 36873869 (+)
AMCG00004186 slc5a6,LOC107601523,LOC107690043,LOC103362495 coding upstream 433717 36748856 ~ 36765206 (+)
AMCG00004197 LOC107698324,LOC104954172 coding downstream 162894 37394102 ~ 37417947 (+)
AMCG00004199 NA coding downstream 196241 37427449 ~ 37445287 (+)
AMCG00004206 NA coding downstream 245081 37476289 ~ 37478687 (+)
AMCG00004205 NA coding downstream 247622 37478830 ~ 37485632 (+)
AMCG00004198 NA coding downstream 298554 37529762 ~ 37545788 (+)
G6383 NA non-coding upstream 170677 37028039 ~ 37028246 (+)
G6321 NA non-coding upstream 416693 36782012 ~ 36782230 (+)
G6320 NA non-coding upstream 417506 36780561 ~ 36781417 (+)
G6319 NA non-coding upstream 419773 36778880 ~ 36779150 (+)
G6318 NA non-coding upstream 420346 36778368 ~ 36778577 (+)
G6421 NA non-coding downstream 84437 37315645 ~ 37318146 (+)
G6427 NA non-coding downstream 106318 37337526 ~ 37341014 (+)
G6428 NA non-coding downstream 112853 37344061 ~ 37344445 (+)
G6471 NA non-coding downstream 283674 37514882 ~ 37516498 (+)
G6573 NA non-coding downstream 1024021 38255229 ~ 38255483 (+)
G6369 NA other upstream 198765 36999357 ~ 37000158 (+)
G6328 NA other upstream 307177 36861547 ~ 36891746 (+)
G6314 NA other upstream 424400 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 501038 36687630 ~ 36697885 (+)
AMCG00004167 NA other upstream 920689 36261788 ~ 36278234 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 601415 37832623 ~ 37847720 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 3095202 40326410 ~ 40341235 (+)
G7094 NA other downstream 4228368 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 4979222 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 5457571 42688779 ~ 42691109 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018252 ptchd4 coding NC_007131.7 CM002904.2 36066408 ~ 36107422 (-)
grasscarp (Ctenopharyngodon idella) CI01000029_00351260_00374024 PTCHD4 coding CI01000029 null 351260 ~ 374024 (-)