AMCG00004197 (LOC107698324,LOC104954172)


Basic Information

Item Value
gene id AMCG00004197
gene name LOC107698324,LOC104954172
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37394102 ~ 37417947 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004197
ATGTCCAAGTTTTTTGTGCTTAACACGCTGTTCGTGTTCTTCAGTGATGTTTCTGCTCAAGTGGAGCAGACGCCCAGTGCGGCTGAAGACTCTATCCCTGCAGGGAAGTACCTTCACACCGACCAGAGCACAGGGACCACGCTGATCTGTGACAAGTGCCCTGCCGGGACCTATGTCTCCAAGCACTGCACAGAGGCCAACCTGAGGGACTGCAGCCCCTGTCGGAATGGAACCTACACCACACATGAGAACGGGATCGAGAGGTGCCACCCCTGCAGGAAGCCCTGCCGAGCGCCCTTCACGGAGAAGACGCCCTGCTCTGCCTTGTCCAACCGCGAGTGCACTTGCCCCCCTCACTTTTTCAGAGAGAAGGACACCTGTAGGCCCCACTCGCAGTGCCCAAGAGGCTACGGTGTGAAGAAGAAAGGCAGTGCGGTGGAAGACGTGAAGTGTCGGCAGTGCTCCCGGGGCACCTTCTCCGACATGTCTTCTAGCGTGTTGAAGTGCAGGACTCACACGAACTGCACAGCACAGGGTCTGAGAATCGTGTCCCTCGGGACCAAGGAGTCGGACAATAGCTGCGGCCCTTCTTATACACACGCCCTCACCTCTGCAGCTCCAGCGAGCTCTGCTTTTGTGGAGGCCTTCTCTGCTTACTTTGCACAGAAAGATATCTTTAACTCAACAGTAGGTGCCCACACCAGTGCGTCAGAAGCCAGCACAGTGACAGAACCAACTGACACGCTGGTGGTCACCACAGAGAGTGCCTCTGACCATGGGGGGTCCCTTGCCACAGAGCACCACAAAGCGACCCAGCCACCACAGAAGCAACACAAGCACCTCTGGGACCACCACACGCACCACTCTGCCACCAAGACCCAGTCAGTGATGGACACCTTGTCTGACAGCAAGGTACCCAACCCTGGGTACAAGCCCACCAGGAGGGGGTCTCCCAGACCCAGTGTGCACAAAAACTTTGACATCAACGAGCACCTGCCTTGGATGATCGTCCTCTTCCTTCTGCTGATGCTGGTCGTGATTGTGAGCTGCAGTGTGAAGAGGAGCTCCAGGGTGCTGAAGAAGGGGCCCAGGCAGGATCCCAACAGCATTGTTGAGAAGGCTATCCAGAAAAAGCCAGTTACACAAGTTCAGAACAAGGAGAAGTGGATATACTATTCCAATGGACAAGGCGTGGATATCCTTAAGCTGGTGTCGGCACAAATCGGAAGCCAGTGGATAGAGATGTACCAGTACCTTGCCAATGCAACTGAGCGTGAGGTGGCAGCTTTCGCCAACGGGTACACGGCAGACCACGAGCGGGCCTATGCTGCTCTGCAGCACTGGACCATCCGAGATGCCGATGCCAACCTCGCCAAGCTCATCAACGCTCTCCGAAGACACAGGCGCAATGATGTGGTGGAAAAGATCCGGGTCGTAATGGAAGATAATCCTCAGtttgatCTGAACCAGCTGATGACCTCTGTGAATGTAACTCAATGCCTCAGCCCTACCCACAAGCCTTTAGAGTCCCCAGGAGTCATCGTGGAGCACTCCCCAGTGGATAGGACCAAGGGATTCTTCCCAGACGAGTCAGAACCACTTCTGCGCTGTGATTCCACCTCCAGCAACAACTCAGCCCTCAGCAGAACAGGCTCTTTTATTACCAAAGAAAAAAAGGACACTGTACTGCGCCAAGTCCGCCTGGACCCATGTGACCTACAGCCCATCTTCGACGACATGTTGCACATTTTAAACCCTGAGGAGCTGCACGTAATCGAGGAGACTCCCTCAGCTGAGGACAAGCTGGATAAACTCTTTGAGATTGCTGGTGTCAAAAGCCAGGAGGCCAGCCAGAAGCTGCTGGACTCCGTTTACAGCCACCTGCCTGACCTCCTGTAGTCACATGGCCAGGGATTGCATTTACTTCATGTATCACAAGCTGGCAAGGGCCGtgagaagcagagagaataatgCTGCATGTACAGTAAAGCCTGGAACATGTGACATGCGCTGAGGCCAGACAGTTTTGTCTGTAACAGTTGCTTCCCACCgtgcacattaaaatacatcttgCACTTGCGTAAATGTAGCTTTGAAAAGGTGTTCTCTTATGTTTTGGAGCTTCTTGTTAGTATTACTGTTCATAGGGAAACGTCAGAATTTACAAATGATGTATGTTACCGTTAAACACTAAtgatatgtaatataatttatgcactaattttataaaaatggCAGTCAGCCAAACCTGCTTCAATGGCCTACGTTTTTTGAAGTGCTGTTTGCTAATGTCATGTCTGTtctttttgtaatgcatttttttattactgcagtttttatgttttacatcaGCAATGTGTATGATCATGTAATGGGCATTTGAGATGATCACTGCTTGGGTTAGTAATCTAATGTAACATTGCAGAGGGTTTGCATTCAACATATACTACTTGAATTAGATGGCACACTTGTGTTTTtagttactttatttttaaaatagtgcTCACCTGATAGACCCTACCTTAGGCACCAAAACATACTTCAtattcaaaacacaaagaagaTTTTGCCGGACAGTGACTGAGGATTCACCGTGTCTGTTTAATCTGTAAGGCCAGTAATATATCAAGCTACCCTGGTGCTAGACTTGAAATACCCTGGTGGTGCTGGTTTAATGTAACAGTCTGAGAAAGTTATTCATGGTGTTATTAAGCCAGCCTCAACGGCCCGAACGAATTGCTTCTGAAACTGGATTTCTATGGAATTCACAGAAGAATGATGGAGATCTGCCTTCTAGCCTGTTACTAATCTATTGAAGTGTTTCTTACCAAGAATTGCTGATGTTTGCACCATATATTCTGGTGGCTGTTTTAATACTTAACACCTGTATATGATAATTGTACAATTATTGTAACATGTACATCAACCAATTAAAGTTCCAACTTTTGTCATAACTGTGTTCACTTGTCATAGATCTGTCTAGATGTCTTGCTGATTTACTCATAGGAGTTGGTCATACTTGTATCATACTGGTTATTTACAGACATAAATGACTCAGTGGGACTTAATGTCAAAtgattttgttccattttaacTTTTTGACATTATAAACAACTTGGtagattaacaaataaataatgtaatttcagtCTAATACTACAAATAGCCCTAAACATATCCTTATCATTGTAACTTTAACTTGAGTCTTAATCATAGCCTTAATGATAACTCTGACATCATACTTAATTATAAGCTCAAAAAGGTACATTTGCACAATATTTTTGGCATCTTTTCCTATGGTTTTCCCATGCACATGCCACACAGTTATGTGTTACCATGGTGTCCCCCTCATGGTTTTCCTCATTAGTCACAATTATCTTAGCAGAGTTCTATTGTGATGTAGTACTCTGGGATTTGCTTTTACCCCagatgtataatgtatttaacatgatgataatgtgtttaatatacTAGTGTATTTGCCCCCCAAAATTGTTTGAGGACAGTGTAAGGGACATAATGTGGCCGTGTTTAGACCTGTCATGTCTTGCACCtgtctgttttaaaattaagtgAGATATCGATGGAGCACAGAGTCCAACAGTGCTGTTTGTGAACACTAGAGGGGACCTGAGGGTTCTTGTCTTTTGTTGCTAAACTGCTTTGCTAATGTGAAATAGTGTAAGAGTGTTTGATATACTTTGGGTAGAGATAAGAGTATACAAATATCTGCCACTGATTGGCGGTGTGTCCTGTGCGGGTGACTTTGGTAACAGTGCACACAAGAAACTCAACATAAGGGACTTTGCTTTGCCTCCTTGCAGAGCTGTGTTTGATCTCCCTCGCCAATAATATTGCTTGTTTCATTAATTAAGGTGTGAACTAATTTATGAGAGCTGATTTTAACCTTCCACACAATACAACTCCGtgattttttattacatttttacacagtGGGGAGGGGGAAGGGCTACTGTGGGGATACACTGGCCCAGCCTAGTCCAGGAGTCAACGAGGTGCATTTATTAAACTTCCAAGTTACTGGCATATTGTGAGATGTGCTAAGCACAtattatgtgttgttgttttatttatggtaTTCATCACTAAGGTATTGGGGGGGGCATGTTTTGTGTGGTTGAAAaggtttctgttttgatttttgatatttaattattttttttgtaaaaccctTTTGCGCAAAACAGTTCTGTCACACGTGCTGGCCCCGCTGCCCTGTGTATAGAAATGGTTGTATGTGTCACACTGTGGTTGTGTTATTCATatggtgtattttaatttcgtcattgatgttttattttttatgccaATAAAGATGGTTGactttta

Function

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member 21-like

GO: NA

KEGG:

id description
K05157 TNFRSF21, DR6, CD358; tumor necrosis factor receptor superfamily member 21

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004197 True 4350 mRNA 0.45 6 37394102 37417947

Neighbor

gene id symbol gene type direction distance location
AMCG00004193 LOC104951820 coding upstream 162894 37198923 ~ 37231208 (+)
AMCG00004190 NA coding upstream 454555 36936904 ~ 36939547 (+)
AMCG00004191 NA coding upstream 475112 36912646 ~ 36918990 (+)
AMCG00004192 NA coding upstream 490008 36884358 ~ 36904094 (+)
AMCG00004187 enah,LOC107553420,LOC102788251 coding upstream 520233 36790434 ~ 36873869 (+)
AMCG00004199 NA coding downstream 9502 37427449 ~ 37445287 (+)
AMCG00004206 NA coding downstream 58342 37476289 ~ 37478687 (+)
AMCG00004205 NA coding downstream 60883 37478830 ~ 37485632 (+)
AMCG00004198 NA coding downstream 111815 37529762 ~ 37545788 (+)
AMCG00004209 SF3B6,sf3b6,pm14 coding downstream 149386 37567333 ~ 37570266 (+)
G6428 NA non-coding upstream 49657 37344061 ~ 37344445 (+)
G6427 NA non-coding upstream 53088 37337526 ~ 37341014 (+)
G6421 NA non-coding upstream 75956 37315645 ~ 37318146 (+)
G6405 NA non-coding upstream 128598 37158176 ~ 37265504 (+)
G6383 NA non-coding upstream 365856 37028039 ~ 37028246 (+)
G6471 NA non-coding downstream 96935 37514882 ~ 37516498 (+)
G6573 NA non-coding downstream 837282 38255229 ~ 38255483 (+)
G6585 NA non-coding downstream 998651 38416598 ~ 38418776 (+)
G6586 NA non-coding downstream 1048449 38466396 ~ 38466643 (+)
G6598 NA non-coding downstream 1198297 38616244 ~ 38616464 (+)
G6369 NA other upstream 393944 36999357 ~ 37000158 (+)
G6328 NA other upstream 502356 36861547 ~ 36891746 (+)
G6314 NA other upstream 619579 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 696217 36687630 ~ 36697885 (+)
AMCG00004167 NA other upstream 1115868 36261788 ~ 36278234 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 414676 37832623 ~ 37847720 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 2908463 40326410 ~ 40341235 (+)
G7094 NA other downstream 4041629 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 4792483 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 5270832 42688779 ~ 42691109 (+)

Expression


Co-expression Network