AMCG00004268 (ints7)


Basic Information

Item Value
gene id AMCG00004268
gene name ints7
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40811386 ~ 40824981 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004268
TTGCTGGGAAATGCCGTAGCTGGCTTACCATTTCCTCTGTCtggcaaatgtgtttttttgtgtgaattaaaaaaaactttatttgaCAGATCCCAGAGCTACTTCTTGAACCTTCAGGGTTCAGACAAGACACCATGTCCTTATCTACAGCTCGATCGTTCCTCTCTGAAGCCGGCTATGGGGAGCAAGAACTGGATGCCAATTCTGCTCTAATGGAGCTGGACAAAGGGCTGCGGTCCGGGAAGCTGGGAGAGCAGTGCGAAGCTGTGGTGCTGTTTCCCAAGCTGTTCCAGAAGTACCCCTTCCCCATCCTGATCAACTCTGCTTTTCTCAAGCTGGCAGACATTTTCAGACTGGGAAACAATTTTCTGCGGCTCTGTGTGCTGAAGGTGACTCAGCAGAGTGAGAAGCACCTGGAGAAAATCCTCAATGTGGATGAGTTTGTCAAGAGGATTTTCTCCGTCATTCACAGTAATGATCCGGTGGCCAGAGCTATCACTCTCAGgaTGCTGGGTAGCATGGCTTCCATTATTCCAGAGAGGAAAAATGCCCATCACAGTATCCGACAGAGCCTCGATTCGCATGATAATGTGGAAGTTGAAGCGGCTATTTTCGCTGCTGCTAGCTTCTCTGCTCAGTCAAAAGATTTTGCAGCAGGGATTTGTAACAAAATCGGTGAAATGATTCAAGGTCTGGACACACCAGTGGACATGAAGCTGAAGCTGATCCCCATGTTACAGCACATGCATCACGATGCCGGCCTGGCGTCCAGCAGCAGgcagctcctgcagcagctcgTCACCTCCTACCCCTCCACCCAGATGATTCAGCTTTTACTGCATTATCTGAAGGAAGACCCCAGGAAAGCGGTGAAGAGACTATCCATTCAAGACCTGAAATTCCTTGCGAAAAAGGCACCTCACCTGTGGACAAGAGAAAACATTCAGACCCTGTGTGAGTGCGCCCTGAGTACCCCTCATGACAGCCTGAAGCTCGGCATGCTGTCTGTGCTCTCCGCGCTCTCCGGAACCATCGCCATCAAACCGTACTTTAATGCGTCTGCAGGGAGCGGGACGCCTCCTTCAGGGCCCACTGACTTGGTGAGGTTGGCACAGGAGTGCTGTTACCATAGCAATCTGGCGGTAGCAGCTCATGGGGTCAGCGTTCTGTCCAACATCGCCATATCCTGTCTGGAGAAAGACCTGTTGCAAGTGGAGCAAGATGCTGTGCTGGGCCTGGAGTCCCTGCTTGTCCTGTGCAGCCAAGATGACAGCCGCACGGCTCAGGCTACATTAAAGACCGCACTGACCTGCACGGTGAAGCTGGTGAAGTGCCGCCCCCACCTCAGCCAGTCGGTGGTGGAGTTCCTGCTGTGCCAGCTCCACTCTGCCCAGGACACTGCCCGTATCCTCATGTGCCACTCTCTGGCGGCCATCGCCATGCAGCTGCCTGTCCTAGGCCAGGGCATGCTGGGAGATCTGGTCGACCTCTACAAAGTGATTGGCCGCTCAGCCACTGACAAACAGCAGGAGCTGCTGGTGTCCTTGGCAACGGTGATCTTTGTGGCCAGTCAGTCGGCTCTCTCTGCCGATGTGAAGAGCGTGATCAAGCAGCAGCTGGAGAACGTGGCCAATGGCTGGACAGTGTACAGGATCGCCAGGCAGGCCTCCCGCATGGGCTGCCACGAGATCTCCAGTGAGCTGTACCAGAGTCTGCGCACGCGGGTGGCCTCGGAGCACTTCTACTTCTGGCTCAACAGCCTGAAGGAGTTCTCCCAGGCAGAGCAGTGTCTCAGCGGCCTGGAGGATGGAGACTATAGCGGCACCATGACTGCCATTGCAGAGGCCTTGAAGTCCTACCAAAAAGGAATTGCATCGCTGACCGCCGCCAGCACTCCTCTGAACCCCCTGAGTTTCCAGTGTGAGTTTGTCAAGCTGCGCATCGACACCCTGCAGGCCCTCTCCCAGCTCATCTGCACCTGCAACAGCCTGAAGACCAGCCCGCCCCCTGCAATCGCCACCACCATCGCCCTCACCTCGGGCAACGAGCTGCAGCGCTGCGGTCGCATCTCTACACAGATGAAGGTGTCGATGGATGAGTTCCGAGGCCTGGCCACCCGTTACGCAGATCTCTACCAGTCCTCCTTCGATGCCGATTCAGCCACACTCCGAAACGTGGAGCTTCAGCAGCAGAGTTGCTTGTTGATTTCCCATGTCATTGAGGCCCTTATCCTAGACCCACATACAGCCAGTTTCCAGGAGTATGGTATCTTGGGTGCAGTGCAGGCCGAGAGCGAGTATGAGAGGAGGGTTATGTCTGTGTTCAATCACGTCCTGGAGGAAGTGGAATTGCTCGGCAGGAAGTACCCTCCTGTCTCTTACTTGCACACCGGGTGTCTCTGTGGTGCAGTCATTGCCCTGCTGAAGGTCCCCCTCTCATTCCAGAGGTATTTCTTCCAAAAACTGCAATCTACGAGCATCAagCTCGCCCTTTCCCCCTCCCCGCGGAGCCTGagtgagccaatcacagtgcagAACACCCAGCAGCTGGCTCTGAAGGTAGAAGGGGTGGTACAGCATGGCTCCTCACCCGGGCTGTTCCGCAAGATCCAGTCCGTCTGCCTCAGTATTCCTCTGGACAACATGACTAACGAGATGGAGCAGCGGGTTGAGCCCCACAACGATTACTTCAGCACGCAGTTCCTGCTCAACTTCGCTGTCCTGGGAAACCACACCGTCACCGTGGAGGCTTCTGTGGTGGACGGCAGCGGCATTGTGTGGAAGACCGGCCCGAAGACCACCATAGCCATCAAATCGCTGGAGGACCCTTTTTCGCAGCAGCTCCGACACCAGcttcagcagcagcaacagtcTCAGCAGGCCGCGCCTCAGCCCCCTCCGCAGAGGAGCGTGTACGCCCGCTTCCAGTGACGTGGGCCTGCTATGAAATTGGCAGTTGAAGTGCAGCAGGATATCGACATTTGGCAGAACGTGACGTTTCGTATCAGGAGCCTGTTGCTTTGTAAAGTTTCATGGTTTGTTAACGCCTTGTCTGCAGTTTGTAAACCCGTGCTTTCATGTTGGCAGGCATTGCAAGAGGCAAACTGAAAGATTCAAAACTGTCTCAAGTAGGAAGTGGGAAAGCTGTGGTCCAAGTAAAGACTTCATTTGTGAAATCTCTTCttgcatctgtttttctttcaacacAAATATAAGCTTAATAAAGAATCTACCATAAAAGAttcggggggaaaaaaaagattcccGATCCAGTTTTGGTTTTGTGAAAGAGTGCAAGAGCATGTGTTTTCATTGCAGTGCTGTGAAACTGAATCAGACAGTGATGGTGGTCTGCAAGTGCAGTCTCTCACCACTGTTTACTGGATAATTTCAGACTTAAACTAACCTCACAGAAACAACTGTCTTCTATTGAATTGTGTGTTTAGCATCACTGTTGCCGATTTAGAGTAGtagtattaaaaatgaaacaaaaacaag

Function

symbol description
ints7 Acts upstream of or within lens development in camera-type eye. Predicted to be located in chromosome and nucleus. Predicted to be part of integrator complex. Orthologous to human INTS7 (integrator complex subunit 7).

NR:

description
PREDICTED: integrator complex subunit 7

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process

KEGG:

id description
K13144 INTS7; integrator complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004268 True 3497 mRNA 0.53 20 40811386 40824981

Neighbor

gene id symbol gene type direction distance location
AMCG00004266 NA coding upstream 81582 40722163 ~ 40729804 (+)
AMCG00004264 NA coding upstream 193196 40606454 ~ 40618190 (+)
AMCG00004265 NA coding upstream 212552 40570960 ~ 40598834 (+)
AMCG00004255 NA coding upstream 562922 40235528 ~ 40248464 (+)
AMCG00004256 NA coding upstream 582555 40220524 ~ 40228831 (+)
AMCG00004267 lpgat1,LOC106607581 coding downstream 26250 40851231 ~ 40861765 (+)
AMCG00004277 LOC107712406 coding downstream 72469 40897450 ~ 40904733 (+)
AMCG00004276 slc30a1a,slc30a1 coding downstream 81411 40906392 ~ 40921474 (+)
AMCG00004278 NA coding downstream 113604 40938585 ~ 40940764 (+)
AMCG00004280 LOC105908978 coding downstream 175666 41000647 ~ 41011758 (+)
G6850 NA non-coding upstream 612424 40148962 ~ 40198962 (+)
G6847 NA non-coding upstream 697435 40110200 ~ 40113951 (+)
G6840 NA non-coding upstream 722472 40088608 ~ 40088914 (+)
G6819 NA non-coding upstream 777063 40015267 ~ 40034323 (+)
G6807 NA non-coding upstream 866331 39944500 ~ 39945055 (+)
G7048 NA non-coding downstream 153018 40977999 ~ 40978319 (+)
G7078 LOC103376870 non-coding downstream 470317 41295298 ~ 41364066 (+)
G7084 NA non-coding downstream 542164 41367145 ~ 41368478 (+)
G7102 NA non-coding downstream 698072 41523053 ~ 41529308 (+)
G7101 NA non-coding downstream 780129 41605110 ~ 41606759 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 470151 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 2963666 37832623 ~ 37847720 (+)
G6369 NA other upstream 3811228 36999357 ~ 37000158 (+)
G6328 NA other upstream 3919640 36861547 ~ 36891746 (+)
G6314 NA other upstream 4036863 36774001 ~ 36774523 (+)
G7094 NA other downstream 634595 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 1385449 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 1863798 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 3793204 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 5137029 45962010 ~ 45968306 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_06373457_06388474 INTS7 coding CI01000051 null 6373457 ~ 6388597 (+)