AMCG00004458


Basic Information

Item Value
gene id AMCG00004458
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50121429 ~ 50135834 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004458
GAAGGAGGCATATGTTTCTCATGAAAACTGACccattttctctgtctctgtgtctttgcaGTCACAGCACTGGTGacagtgaaaatgaaagacCAGGTGGAGGTATTGCTGGGAAAACAAGCTCACATCTCATGCAACTCCAGCTTCAGCGAGTTGCCCAGCAAAGTGATGATCCAGTGGTTTGTGGTGGAGAATGGCAATCGGGAGCGGATTCACTACAGCGAAGGGCAGGAGAACATCGCAGACACGGGCACCGACTACACGGAGCGCATCAGCGTGAGCAAGGACAACATCCTCACCATCAGAAACGTGCAGCTCAAGGACAATCGGGACTTCATCTGCCAAGTCGGGGGAATGTCAGCTGGGAATGGGGAGAGCAAGACAGAGCTGAAGGTTTACAATGCCCCGGAACCCCCCGAGATCGAGGGTACCCATTCAGGCATCTCTGTCACTCACGATGCACCATCCCAGATTGCAACCTGTAAAGCAAGGAATGGCTTCCCCAAACCCAACATCACATGGTACCAGAACCTCACCCCCCTGCAGAATGGTGAAGATGAGACCAAGGTGTCGACAAAGGTCACAAGGGAGTCCAGTGGCATGTTCACAGTGGACAGTCAGCTGTTCTACAAGGTGGCCAAGGAGGACATGAATACCACCTTCTACTGTGAGGTCAGCTACTTCATGCCAGGAACCCTAAACATGTTCGAGTCCAATCGCATCAACATCACTGTGCACTATCCCACGACAGAAGTGGAGTTTCGGAGAGAGTCTCCACACGGGCTGCTGAAACAGGGTGACACTGTGAAACTGCGTTGCCTGGCCAATGGGAACCCCCCACCGGCCTACTCTTTCTTCAAAGTTCAGGGTGAGAAGGAAATCGAGATCAAAGCTGAGCAGGACCTCTTGACCCTCAAAGACGTGAAGAGACAAGACAGTGGACTGTACCGCTGCAAGTCCCTTGACCTGGAAACCTTTGACGAATACACTGGAGACCTGGACATCTTTGTCAACTATCTGGAAGAAGCTGTTCTAACTCCAGCGGCCATTGCTTTTGTTGAGGAAGGACAAGATCTCAGCATGTCGTGTAATGCCCTGTCATCTCAGCAGACCAACATTGTGTGGCTGAAGGGTGATCAGAAAATCGGTAAGGGAAACACAATGACTTTGACGAACGCCAGCTTCGACACAGCTGGACAGTACACCTGCAAGGTCAGTGTGCCCACCCTGCCAGACTTGAAGACCAGCAGCACACTGGAAGTCAGAGTACAGGGAGCGCCCAGGCTGAGTTCTCCTAGGCTGAAGATAGAGCACAGAGTGGAGGCATTTGTCAACCTAACATGTGTAGCCCAAGGATACCCCCTGCCTAATATCACCTGGGACATTACAAGCTCCAAGACTTGGCAGGTGGTGATGAACCGCAAAGTCAAGCAAGGTGTGATTAGTGTGGTGACTGCGGAgatgacctctgacctcacTGCTGCTTGCAAAGCCACCAACGACCTTGGCGAAATGACGCAGCACTTCATAATATCTGCCATTCCTCTGGAGCCACCCACTACAGCCcctacaacaacaactacagTAGCACAACCccacatgaagaaaaacaagaaagAGGGTAATGGCGTCATCATCGTGGTCATCATTGTGTGCATCCTTCTCCTTGCCATCTTGGGCAGTGTGCTCTACTTCCTGTACAAGAAGGGCAAGATCCCCTGTGGCCGCTCGGGGAAGCAGGATTTAACGAAGGAGAAGGCCAGTAAAGATGACATCGTCGTGGAGCTGAAGGCAGAAAAGTCAAACGAGCAGGCTGGGCTGCTGCAGGGAGTCAATGGTGACAAGAAACCGCCTAATAACCAGTGTGAGAAGTACATCGACCTGCGGAACTGAGACCAGGAAGAGAAGAGCTGTAAGGAAACCGAATGTGGCTCTTTCTGTACCTCAGGCCGTGCGCAAGGTGTGATTTTGTGATACCTGTCAGCAAATCGAGATCAAGACTGagcttttgtaaatatattcacaaCCCTGCCTAGTCCACTTCCAAGATTTAAATTATGAGGCTTATATTGGCCATTGTCAGAGAAGAACTACTGAAATACTATCCTAGACAGGGAAAATAGATTGTTTGAATATGTCATCCCCCCCTTTTCAGCTCAAGTGCCATTCCTGGCAATAAGTATAAGTgatgatgatttttttgttgttcttatgaaaaaaaaaaaaaaaatatatatatatatatatatatttagttatttaaaataacctttCAAGAAAAAGTTTAAAAGACTCCCAACAATAACTTTAGTCGTGGCAGATTTTCTAaatttgttacttttttggtttagttCGCTTTCACCTGctcatacaattattttacagacaCAGTTTTTGAGTAGTTGAGATACGATAACGAATGGAAAAGACAGGTTTGTCACAAAATCCCACCTGCCTGCCTTGATAATCGTCCTCCATGTTCATATCCTACCGACTACTGCTCTACTATCCCAGCAACCTGACCCTCCTTCGCAGTGAGCTGATTAACAATAAACACTGTGCGCCCCAATGGGACTGACCGTCGCCAACTCCCCACACTGAAGACATGACTGGAGACACAGTGCCTTTTACCAAACACGCATAGATGCCCCAGATGAAGAAACTGCTTAAAGACATCTTGCAAAACCAGCTCCTTTTTACTTGACATTTAATCACGTAGCTTGGCCATGACACAATGTCTTTACTGTATTTAGTTATTAACAAAATTGTATGAGGATTTGGCATAAATATACCGTCCACAACCCCACCacttttgttgtatttaatgCATCATTACTGTAACAAAAGTCTTTTGCATGGGGGCTTGGAAAATACTCTTAATTTGGAAATCCATGTGTGAATATAGCAACCAGCAGGAGGCTACTTGACGCATCTGCGTTTGCTTGCAGTGTGTtggtttaataaacaaaacaagcagtTTTCCCTGAGGAACCTGCGATGTCTGCTTTCCCAGCCTAGCttggcagtttttattttccttatctGTGAAGATTTAGGGGAACCTTCCCACCCTCCTATTCATCCTTCTTGATGCATAATCAACACAAAACCTTTTAGCTCCAGTACACGCTAATGTATCTTTACTGGGCTCCCTAAAGTGGAAGCACACATTACATACAAtctacacacatatacaatttGCTGTAATAGATTATTTGCAAACGTTCTCTTTTGGTTTTGATGAACAGAGAAGCAAATATTGAAGTGGCAACTCATCACCCAGTGAATGCCTTCATAATGTCGGGAACATGATCTCTGAATGTTCATTGTTGTTTTAAGAGACGTCTTGACTACTTGTCAGTTtttttggtggttgttttttgtttttttaaatcctggtTAATTCACGgatgaatgaaaagaaagactCTCTAGGTATCCCCAGCATGCggagaaatgtgaaatatattcagGTGAAATTAGTTTGGGGTACCCCAGAGACCGTAAAGGGCTGTGTCAGTGTGGACGATATTCGCTCCCATGTAATTTGACCTATTGGAGCAAACTGTAAAGCAGCTCAGCTTTGTGGGACTCCAAGCGCCAATGCATGGCAGCTGTTGGATAGGTTGGAAAAACCATGGCACAAGAGGTACTGCCATAAAAGTTgggaaattaatggaaaaatacatcCACCAAGCCCAAACCTGTCGAGACAGCTTTAAATTTCTATGTAACCTTTTACTGATTGGCTTTTGTCCGAGTCACCTGGTCTCTCAGTTCCACTGTGTCAGCTCTTCTGGCATTAACAGGAAGAGACAGAAAACTAAATATCGAAACAAGAAGTCCAGAAGAAAGTGAGGGAGAAATTAAGTTCTCCACAGCACagagttgtgtgtgtttaagggtCTCTGGAGGAAGTTGTTTTGCAGACAAGGACCCCTAGTCGACCACAAAAGTGTTCTTCTATGCTGTTACTGCGCCACTGAGGCGAATCCTTAAAATCAGCGCAAATATGTCAGTTATTGCTATGGACTACTGTCAAGCTTGtaatgtttgtaaatatttatactgtaaaaGTCTAGAATAAGTAGTGGCTCAGCTTAAAAAGACAAGTTTGAGCCTTGTTCGTCAAAAAGATAGCATCGTATTCTAGAATACCTTCGGATTGCGGGATGTcacactttttttgttcttcaataattatgttttgttgaGAGATTAGtagcactgaaatatttttatttgtttttgttttaagagaaCGGGCTTCAACCCAAAACTAGAGTTAATCTTGAGatgaaatgttgcatttttatgACTGAGGTTTTGACTGCCGAGCAGAATGATTCCTGCGCCTGTCTTTGGGTGCCGGGCTGCATTGTGCTCGTGGGCTCAGAGGTAGTGCCCTGGGCTCCAGTTTGGGAGACAACCAAGAGCCAATATCATGTTtgcaataacattaaatacactaCTTGGAAAGAAAACTATACTGCAGTATAGAAATAATTGAGTTCACAACTTGAAAGAAATGGGGAATTAGAAGCCTTTTGGATACACAGTCTACATGAAAGTGTGtttaaagaaagagagatggcTTTTTCGTTTATACTACTGTTGACTTTTATTCATTGAATcttgtttttaacaaatactTCCAAAAGCACAAAACTACTCACCTGACTATTAGTGTGTCTTTCAGTCAAGCCTCGTCTGTTATATAACAGACCTAAACCGGAGTGGTTCACTGAAATACAGGGCATTGGATTCAGCTGTCAAGGTCAGTAGTCTGATAAACTGATACATTTTGGGACGCTAAGCCCTAGaacaaataacaaaagctaCCAGTGGGGTTGCCTTGGAAAGTTTCCGATAAGGCGAGAAAAGGAAGTGACAATCTCTTCTCCATTACTACACCTGACCCAGAACAGTGTTTGTATGGTCTATACATATTCACAGAGCGAGGTTTGACTGTGACATATTGAATTCAGGAAACACAATGTGTGTGAGGAAAGAAAAATGGATAGTGGGAGGTAAGACTATAGAAAAGAGTAAAACTGtgcctttttcattctttctttttgtgtggAACTGTTCAATTCAGGAAAAGAGGgggtcagagagacagaggtagAGGTGCGAATTGTACCAATCTTACCACTTGACCCCCTGTTCTTTGCCATTCAGTCCGGCTCATAAATGACATTCAGATTAAACTGACTTTGACACAGAGGCTaatcacataaaacaaaataaaaaaatgcatttgatcatGGGTTTCCATTGGAAAGAAGCAGGATGTCTGTACGAAATAAAATGCAGCCGTTACattctgtgtttttgctttgcgattggcattttttttttaaatccagacctaaataaacaaaaggggggttagtttattttatatgcttaattctgactaCCTGATACCACATACAATTCTATTGACACCATATAATGATTAGTAGAATTTCATTGActtaaacttaaataaacaaatagaagtaaagcaatgaaaaaatgaacacatttaaatgtaatattttgatcTGCAGTTTATTCTCATACCCCGCCcccaacacatacacaccacaAGCTATACATTACATCTCAACTCCTCTCTTCTAACCCcccacaagttttttttttttttttttttttaaagatctctTCTAACCAGTGGTACCTGTGTAAAAGACTGTTAAAACATTCAATCcattaattatgatttttttatattttcggtttgtttttgcaaatgtgtGTAAATTAAGATGTACTTGTGAACTGATgcttgcatttttgttttctcttgttttttactgtcattttgaaagaaaacaatgccaaataaaacgtaaaaaaaaaagctcaagaGAAGAAAGCTTTGTGTTTGCAtcacacattcataaataacCAGTAGAGGAAATAAATGCCATTGACACAAGCAA

Function

GO: NA

KEGG:

id description
K06534 MCAM, CD146; melanoma cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004458 True 5954 mRNA 0.42 16 50121429 50135834

Neighbor

gene id symbol gene type direction distance location
AMCG00004455 LOC107601691 coding upstream 89087 50004310 ~ 50032342 (+)
AMCG00004453 kmt2a coding upstream 131765 49989275 ~ 49989664 (+)
AMCG00004448 LOC108233819,LOC107098727 coding upstream 133938 49984727 ~ 49987491 (+)
AMCG00004450 ube4a coding upstream 138271 49968474 ~ 49983158 (+)
AMCG00004452 NA coding upstream 157713 49952140 ~ 49963716 (+)
AMCG00004459 NA coding downstream 48868 50184702 ~ 50187493 (+)
AMCG00004462 slc37a4,LOC106612980,LOC107670393,LOC107593481 coding downstream 63671 50199505 ~ 50212190 (+)
AMCG00004464 rps25,LOC107758587,LOC107583381,LOC107679519,LOC107565279 coding downstream 76383 50212217 ~ 50214554 (+)
AMCG00004468 NA coding downstream 122997 50258831 ~ 50265447 (+)
AMCG00004469 tbrg1 coding downstream 136708 50272542 ~ 50281575 (+)
G8356 NA non-coding upstream 53348 50066435 ~ 50068081 (+)
G8188 NA non-coding upstream 535334 49582118 ~ 49586095 (+)
G8167 NA non-coding upstream 685678 49434043 ~ 49435751 (+)
G8140 NA non-coding upstream 873395 49246488 ~ 49248034 (+)
G8111 NA non-coding upstream 1092246 49024156 ~ 49029183 (+)
G8371 NA non-coding downstream 1795 50137629 ~ 50139705 (+)
G8372 cbl,LOC107601723 non-coding downstream 7471 50143305 ~ 50144990 (+)
G8373 NA non-coding downstream 9537 50145371 ~ 50145823 (+)
G8374 NA non-coding downstream 12042 50147876 ~ 50148195 (+)
G8375 cbl non-coding downstream 13050 50148884 ~ 50149121 (+)
AMCG00004449 NA other upstream 169896 49938552 ~ 49951533 (+)
AMCG00004442 NA other upstream 307405 49806361 ~ 49814024 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other upstream 802594 49298736 ~ 49318835 (+)
AMCG00004424 NA other upstream 1061374 49043590 ~ 49060055 (+)
G8099 NA other upstream 1187334 48932450 ~ 48934095 (+)
G8377 NA other downstream 15430 50151264 ~ 50157719 (+)
AMCG00004463 NA other downstream 100843 50236677 ~ 50243043 (+)
AMCG00004477 NA other downstream 605554 50741388 ~ 50753432 (+)
G8606 NA other downstream 979107 51114941 ~ 51115262 (+)
AMCG00004501 NA other downstream 1803715 51939549 ~ 51946818 (+)

Expression


Co-expression Network