AMCG00004506


Basic Information

Item Value
gene id AMCG00004506
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52049032 ~ 52057186 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004506
GTGCAGCCAATAGGATTCTGGGAGGCGGGACCACGCTGGTAGCGAAGGCAGTGGCGTCCTGGGCAGCGGAAGTTTGAAGTGGCAGTTTGGACGTTTGAACAGCCGGGTCTGAGGAGGTCTGGCACACATTTCATCCTGCAATATATACACATCGACGTGACGGTGCGGTAAAAGTCGTTAACCAACTTCATCACAGAAAGGGATGAAAACATGAGTCCTGTGAAGAGCAAGAAGAGGCCGGGGGCGGGGGGCTGCACACGGGAGAACCGGGCCACTGCCGCCGGCACAGAGAGGCAGCCTCGGCCCCGCAGCCTGGTGGTGAACCAGAAGGTGCTCGCCGAGAGGAACCAGGCGGTAGTGCCCGTGGGGGCCTGGGTGGAGAGCGGGCAGGACTGCCAGGAGCACCCGGCCATCCTGGCCCTGCTGACGGAGGAGCAGCAGTCGGAGGCGTggcaggagaaggaggagagtcTGCGGCGCTTCCAGGAAGACGTGCGGCAGCGCGTGGCTCAGCAGGCCAGGGCCAGGAAGAGACGGCAAATGCAGACCTGTTACGAGACGGCGCAGCACGAGGGCAGGGTGGTGCAGCAGTCCTGCGATGCCGCCCGGCGCCTGACTCCCAGGAAGAACGCGTTTTCCTCCGAGCCCCAGGGGGAGCTGGCCATCTGCAGCCCGGGCTCGCGCTGGGTGAGCGCCCAGGGTCTGGGGGCCGAGAATGGGGGGACCGGGGTGACTGCCAGGGCCTTCCAGCAACAGAAACATCagctgaGCAAAGTGAGGCAGCAGGTCCGACGCCGACTGGCTTCCTGTCAGACTGTGCCCACGGGGGAAGTGACATCAGAGCTCCCAGGGGGCATCTGGAGAACCTCGCCAACTCGTGATGTGTGCGAGAGGCTGACGAGGGAGCCCTACCCCACGGGTCCCATCCCTGGCTTCAGCACGGACTTCAGGGCCACTCGGGTCCTCTGGCCCGGGGAGGATCAAGAGGAGCTGAAGAGACAGCGCCAGTCGCAGTTCCTGATGTACCGCCGCCTCTTCATGGACATCGAGAGAGAGCAGGTGAAGGAGCAGCGTCGCCACCGGCAGCACCTCCGCAGGATCACCAGGATTAAGGCCGACAAAGAGCGACAGAGGCGAgctgaggagaggaggatggagcgGCCAGTGGAAGGTGCGGACGAGAGGGAGGACACGtccgagagagggagggagatccTGGAGAGACTGCGGCTGGAGGAGGACGAGGGGgcgcaggagagggagaggaaggcaCGGGCGCAGAAAGACAAGGAGGCCACGAGGTACGTGGAGGCTCTCCGGGCGCGGATGAGTGAGAGACTGCAGCAGGAGAAGGCGGAGCTGCCCCCTCTGTGTTGCTGTGGCGAGGGCTTCTGGGACTCCCATCCCGACACCTGCGCCAACAACTGCGTCTTCTACAAGAACCCCAGAGGCTACGCCCGGGCGCTGCAGTCGGTGCTGTCCTGCTGCGACCTGCGGGACGGGAGCCTCGGTCACCGGGCGTCCGCCAGGAGGATAGCCTCGGCCCACGCCCTGTCCCCCAGGAAGTAGAGCGGGCCGAGGACCGGCGCTTCTCAGCGACTCTTCTTCTGGAAACGGACTCGAAGGACAGCGGCCACCAGAACACGATCAGTTTCCACCCGCTTGTTTTTTTGATGCAATCTTATTTATGAGaacttaaaaataagtattcacccccctcaTCTGCAAGAATATTAAAGACTGATCAGTGAAGAAGAAAGATTCCGACTGAATGCAGGTGTAAACGGATCGTTCTTCGAGTCCAAGTTTGTAATTGTATCCCCCCATGACTTGTGTTGtttggtgtgtttttcttctgctttctgGAGCTCCAAAGGAACGCTTCAGTGGTTCCAGAATGTATGGTGTCTGTTTTAAGAGGGACTTTTCTCAGTGGCGGCAGGGGGCTTATGAAACTGTTCATTGCGCAGGAGCCACTTCCACTCTGACACCGAGTGTCTCGTGTCTGCATGAATAGTAGGACTCTGCTTTGCCTGTTCGTAAGACCGTGAAGAAGCAGAACTGGCCTGAGAATATGTGAACAGAGTGAGGTACAGCGCCAATGAAACTGCTTTCGGACTATGTGTACTCCGAGTAATGACCAAAGCCTACCACCCAAACCCCAGGCCTCAGACCAAAGACCTTTGACCACTCGAGGACCTCTTTGAATGTGCTGATTGCTGTGGATAATTACTAGGAGTCTTAACATGGTTGGCTAACACCCATTACCAGTGTGTTTTATACTTTGATAGCTTTATAATCTATTTAAGAATGAATGAAATACTGAAAAGGTTGTGAAATTGTCCAGCTGTTGTGTGGAAGTCTTTTTAAATCCTTAGGcttgtgttattaatgatgAATGTGTGAGAAACAGATTGggtgccttttttatttgttattataacgagtggtttgtttttgtagctTGTCTTCCATAAAATATACATCGAATCAATGATATCTGGGACGTGATCTTATTCGTTATTCTTCGACAAAGCTTGCGCTTGCATGGTCAGATCCTTGAGAACAATCCAAGATATTTGTTCACAgcccttttatttttgtctggtG

Function

GO: NA

KEGG:

id description
K16752 CCDC15; coiled-coil domain-containing protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004506 True 2610 mRNA 0.56 9 52049032 52057186

Neighbor

gene id symbol gene type direction distance location
AMCG00004507 NA coding upstream 5577 52028739 ~ 52043455 (+)
AMCG00004499 NA coding upstream 76827 51963369 ~ 51972205 (+)
AMCG00004504 NA coding upstream 98783 51948473 ~ 51950249 (+)
AMCG00004498 NA coding upstream 111632 51931349 ~ 51937400 (+)
AMCG00004500 NA coding upstream 123556 51919974 ~ 51925476 (+)
AMCG00004508 NA coding downstream 1523 52058709 ~ 52072945 (+)
AMCG00004510 LOC103353371,LOC104918028 coding downstream 22484 52079670 ~ 52092210 (+)
AMCG00004511 NA coding downstream 100642 52157828 ~ 52158748 (+)
AMCG00004514 pou2f3,LOC107600771,LOC107664296,LOC107744320,LOC107712933 coding downstream 114100 52171286 ~ 52191311 (+)
AMCG00004513 NA coding downstream 140142 52197328 ~ 52212412 (+)
G8658 NA non-coding upstream 385608 51645849 ~ 51663424 (+)
G8605 NA non-coding upstream 934180 51114580 ~ 51114852 (+)
G8596 NA non-coding upstream 1077730 50970956 ~ 50971302 (+)
G8538 NA non-coding upstream 1289672 50759075 ~ 50759360 (+)
G8509 NA non-coding upstream 1353465 50695224 ~ 50695567 (+)
G8764 NA non-coding downstream 33699 52090885 ~ 52091291 (+)
G8775 NA non-coding downstream 111130 52168316 ~ 52168540 (+)
G8808 NA non-coding downstream 211414 52268600 ~ 52268807 (+)
G8811 NA non-coding downstream 311907 52369093 ~ 52369476 (+)
G8816 NA non-coding downstream 475543 52532729 ~ 52533018 (+)
AMCG00004509 NA other upstream 35402 51989353 ~ 52013630 (+)
AMCG00004501 NA other upstream 102214 51939549 ~ 51946818 (+)
G8606 NA other upstream 933770 51114941 ~ 51115262 (+)
AMCG00004477 NA other upstream 1295600 50741388 ~ 50753432 (+)
AMCG00004463 NA other upstream 1805989 50236677 ~ 50243043 (+)
G9012 NA other downstream 1126208 53183394 ~ 53183983 (+)
AMCG00004546 dixdc1,LOC107715327,LOC107693513 other downstream 1201993 53259179 ~ 53270254 (+)
G9118 NA other downstream 1546575 53603761 ~ 53607898 (+)
AMCG00004563 NA other downstream 1578853 53636039 ~ 53670522 (+)
G9128 NA other downstream 1590825 53648011 ~ 53843859 (+)

Expression


Co-expression Network