AMCG00004509


Basic Information

Item Value
gene id AMCG00004509
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 51989353 ~ 52013630 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004509
ATGGAGTGCTACAACGAAGACTGCAGTAAGCAGGCCGAGGAAGACATCATGGACATCCCCCTGGATGACCCCGAGGCCAACAAAGCTGCTGCCAAGATCCAGGCCGGCTTCCGTGGCCACATGACTCGGAAGAAGATGAAAGACGACAAGCCCAGGGACGAAGTGAGCAGCAGCGGCGTGGGGGAGAGCTCCGGAGAGTCGCTCAACGGCAGTCAGAGGGAGGCAGTTCTCAGGATTTTCAAGTCCAGGTTTGCCCACTCGAGAGCTGTCCTTGAAAGCTCAGATGTTGCTCGAGGCGTCGTGCTCTTTACCCTAGTGGTCAGACCGGTTGGGTAA
>TU10796
agagagagagagagagagagagagagagagcgcactTGACTATTTGCAGAAGACGCTCGGTGTTGGAGGCAAGAACTACATGCGACTTTTTTACCATAGGACGATAGGATCCATTTCCAAGATTTTAATCTCGTTATCCGCGGGCAATGGAGTGCTACAACGAAGACTGCAGTAAGCAGGCCGAGGAAGACATCATGGACATCCCCCTGGATGACCCCGAGGCCAACAAAGCTGCTGCCAAGATCCAGGCCGGCTTCCGTGGCCACATGACTCGGAAGAAGATGAAAGACGACAAGCCCAGGGACGAAGTGAGCAGCAGCGGCGTGGGGGAGAGCTCCGGAGAGTCGCTCAACGGCAGTCAGAGGGAGGCAGGTGCAGCCGAGTCTGAAGGGGTAATGGGAGAAGACGCCTCGGCCCCCGaacagtgagagagggaggactGCAGCCGGGCGGAGGACAGCAGACCTGCCTGACCTTTTTCCAGTTACTATAGAGAAACATTCGACGTTCAGCATTCAACACCTAGAAACAAATAGATTCAGAGATATTTTATTGAATCGGTGAACTTGTCCCCACTTTCCTGCTTCCTGTTCCATAAATGTAGATTTCTGTTGATGAATAtataacattcacattttattttaatctcataTTGGTACTACGCCCATTATAGTGTGAAGAGTGACAAAAGGGTTTCCCGTTtacacaatcaaattaaataggAGCAGGTGAATGTCATACAATATTAtaactctttttttatttcaatatttattactgtattgtactgtctTAAGtctctatctttctttctttctttcttaaattgAACGCTCcctttaatttacttaaaaagcaaaatgcctttgagatttgttttttgatgtattGCATGAATGAAAGAGTTTACTTTCCTGGTTTGCACGCACGAGATGCCcgacacacaaacgcacacgcTGACCTTTCTGACAGAGACTATCGGGAAAGGTAAGATGCCTCCCTTTATTGTGAGAACTGTGTGGGGGCTCAGATTTTGGAGTTAAACTCGTCCGAACTGTgtcaaacagattaaaaaagatTGAAGGTTTATTTAGCTTGTCCAAAGACAAACCAGCAATCAAACGGTATATAAGTAAACGATCAACTGACAAATGCTGATTCAAGTCCCCTGTAGacgtttttttatgttttgttttggaatctcaggaagaaacaacaaattaaaaagtgcataAATCGTGAAGTAGTTGAAGTAAATAATAAGTAAGACAGTTTGGGGCTTACAGACTACATCTTTAATCTGCAGATCGTTATATAAATTACTTTGTAAGcttattttttctcccttctGCTGATTGCCTTTTTAATGGCCTTGTTCAACAGAATGGAATGGcagcacattaaaacaaagaaaacaacgactttaattaatttgatgttatGTTCTTCCTGCACATATTATGAGAAATTGCATAGTCATCtttgtatacaaataaaaggagTCACAGGTGCGAAATGCCCTGGAACAAATCAAAACGTCGGCCCACCCACAAAGCACAACGTACAAAGCAGTGAATTAAGGGCGGATTGTGGTTTACATGTGAGTCATCTTGCAGGCGTTTAATTTGTAGTTGCCAGGTGGGTTGAGGTCTTGATTAAAGCAGGGCCaccattcttcttcttctccatctTCATAGTTGCTGCATTTGTTGTGGATTTAATAACATATATAATTGcctttatttcaattatttaaaatgtagtcgCTTAACAACATGACCTTCCCACAGTGTGCTGCTGAAAGTGCAAGAACCGTTTCTGATGTGGCTGTTGGCGCTGCTGCTTTGAAAGGTTAAGTGAAAACATTGTACCAGTGCTAGTTGCGAGTCTTGATGTGATTCCACCCTCGTAAGCAATGTACGTGAGGATTAGAGATTCAtctcttgtgtttttcttcGTTGTGCATCAGACTTTCTCAGATTAATTTCATTTGATAGCTTTAGACTTTTGCATCAATACTTTGTAACTGGGACATATGAGTAATCTTTCTTTACTGATATCTCCCTCAACTGCGGGAAATCCTATAATTGGCACAACTCTAcgacaaaacacagacacaaggaCTGTTTAAGCAACAGCATTTTcctatttatattaatgtaacataggaaagtaaatatttaaaatttgatCCTTCGTTTATTTCTGTTCTCGTTTGCAAATGATCATGCCTCACGTTGTCCAATTACAGGTTTGTTAACTCCATTGATTTACTTTTGCTATCGTGTTTTATATACTTAAAACAATATCGGAGGGGTAGGGGTGTGGGGGTGAATTAGTTCATTTATTATGTATCCAGTGAAGTGCATGGGTATCAGGAAAGTGGATTTTataattgattttcctttttggaTGTAAACTTTCAACTGATTGACTTCCTTTCCTTTTCGCTGCAGATGGACaagaatgcaaatgtattaagtGATATAGACTGCGTACATTAGCATGCTGCATGTAAAACCTACAAACCCGAGCTGGTTTTCTCTTGCAACCCTGTAAAGAGGTTCCATCTGTAAAGACTTGAATGGATTACTAATTAAACCTGAGATTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004509 False 336 mRNA 0.57 3 51989499 52001989
TU10796 True 2615 TUCP 0.40 3 51989353 52013630

Neighbor

gene id symbol gene type direction distance location
AMCG00004499 NA coding upstream 17148 51963369 ~ 51972205 (+)
AMCG00004504 NA coding upstream 39104 51948473 ~ 51950249 (+)
AMCG00004498 NA coding upstream 51953 51931349 ~ 51937400 (+)
AMCG00004500 NA coding upstream 63877 51919974 ~ 51925476 (+)
AMCG00004495 NA coding upstream 137149 51850684 ~ 51852204 (+)
AMCG00004507 NA coding downstream 15109 52028739 ~ 52043455 (+)
AMCG00004506 NA coding downstream 35402 52049032 ~ 52057186 (+)
AMCG00004508 NA coding downstream 45079 52058709 ~ 52072945 (+)
AMCG00004510 LOC103353371,LOC104918028 coding downstream 66040 52079670 ~ 52092210 (+)
AMCG00004511 NA coding downstream 144198 52157828 ~ 52158748 (+)
G8658 NA non-coding upstream 325929 51645849 ~ 51663424 (+)
G8605 NA non-coding upstream 874501 51114580 ~ 51114852 (+)
G8596 NA non-coding upstream 1018051 50970956 ~ 50971302 (+)
G8538 NA non-coding upstream 1229993 50759075 ~ 50759360 (+)
G8509 NA non-coding upstream 1293786 50695224 ~ 50695567 (+)
G8764 NA non-coding downstream 77255 52090885 ~ 52091291 (+)
G8775 NA non-coding downstream 154686 52168316 ~ 52168540 (+)
G8808 NA non-coding downstream 254970 52268600 ~ 52268807 (+)
G8811 NA non-coding downstream 355463 52369093 ~ 52369476 (+)
G8816 NA non-coding downstream 519099 52532729 ~ 52533018 (+)
AMCG00004501 NA other upstream 42535 51939549 ~ 51946818 (+)
G8606 NA other upstream 874091 51114941 ~ 51115262 (+)
AMCG00004477 NA other upstream 1235921 50741388 ~ 50753432 (+)
AMCG00004463 NA other upstream 1746310 50236677 ~ 50243043 (+)
G8377 NA other upstream 1831634 50151264 ~ 50157719 (+)
G9012 NA other downstream 1169764 53183394 ~ 53183983 (+)
AMCG00004546 dixdc1,LOC107715327,LOC107693513 other downstream 1245549 53259179 ~ 53270254 (+)
G9118 NA other downstream 1590131 53603761 ~ 53607898 (+)
AMCG00004563 NA other downstream 1622409 53636039 ~ 53670522 (+)
G9128 NA other downstream 1634381 53648011 ~ 53843859 (+)

Expression


Co-expression Network