AMCG00004566


Basic Information

Item Value
gene id AMCG00004566
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53826947 ~ 53848054 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004566
ATGACCCAGAAGCACCCAGTGAACAACCTCAAACCAGCTGTGGTCAAGGTCTATGACTACTACCAGACCAGTGAGCAGGCTGTGTCTGAATACACCTCTCCATGTCCTGACGAGTACATGACTGTCTCTCAACAGCTCACAAGGGGAAAAACCTATCACTATCACATCACCATGACCCAGAAGCACCCAGTGAACAACCTCAAACCAGCTGTGGTCAAGGTCTACGACTACTACCAGACCAGTGAGCAGGCCGTGTCTGAATACACCTCTCCATGTCCTGACGGAGACCCGACGAATTTGTCCATTGGTCCTCCGGTCCGTGTCTGCGTGAGGAAGATGACGGTGGTGTCGTTTAAAAAGGGGATTCCGCTGGGGGGGGCTGTAGAGAAGCTGTTTGTTTGCTGCATTAAAGGAGAGCAACTATTGCATGAGACTGTGGCATACAGTCGAGAAAGTCGGGTTGGTTACCAGCGGGAGCTCAACTACAAGCATGATGATGGATCTTATAGCGCCTTCGGCAATTCAGACAGCTCGGGAAATACATGTGTGGATTTTGTGTTCCAGGGTGGAGTGAGTGACGAGGTGACCCTGACTGCCTACATCGCTGCTGCCATGTTGGAACTGAACACCTCTGTGTCGGCCAGCTTCCAGAAGGTTGAGAGATCGAGGTGGGGTTCCCCACATGGTCCACATTACAAAAGCGAGACCCACACAGTCTCCCAGGTTCAGAAGCCACATGGCAGCTACCTCTCCATCGAGGGCACTGACACGAGCCTCCCATGTGGGGAGGAAGCTTTAATCAGCATCAACTATGCTGTGACTGAGGTGGACATACAGACTGACAAGATATCTCTTGATCTGTTCATCCTGATTCTAGCCAAAGGGGCCATTTCCTTGTATGAGCACATGAAGGTGGATCTTCCCAAACATTCATTGAAATTAGGCAGGGTTCCCTTCAGGCTGCCTGTGGATTACACACTGGCTCCCATTGCCCAGATGCTGGTCTATACTGTGCTGCCAGGAGAGAAAGTCATAGCAGACAGCTTCAACTTCCAAGTGGAGAAGTGTTTGCCCAGTGAGgtGTCCCTCAAGTTCTCGTCCCCCGAGGCGCTCCCTGGAGGTCAGAGTGCCGTGACTCTCAGCTCTCAGCCCGGCTCTCTGTGCTCCCTCAAGGCCATCGATCAGagtgtgctgctgctggacaGGAAGAATGAGCTGACCATTGACTCGGTGAAAGTGACTCCAGCCAAATCCTCAGACTACACTCTGGAGCCGTGCAAAGGGTGCGAGTACACTTCCTGTCTGTGTGCCAACGAAGCAAAGACCTTCCACTGGACTCTGGTGCCTTCAGCCCTTGGGACCGTGGAGAAGGAGGAGGTCCAGTTGCAGCTCCCAGAAGTCATTGTGGAGGGATCTGCCCGAGCCTCCATCTCCGTTTTGGGTACAATCCACAGGCACCGTACAGCTACACTCACTCTCTGGCTCTAA

Function

GO:

id name namespace
GO:0043606 formamide metabolic process biological_process
GO:0019556 histidine catabolic process to glutamate and formamide biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:0043648 dicarboxylic acid metabolic process biological_process
GO:0052803 imidazole-containing compound metabolic process biological_process
GO:0052805 imidazole-containing compound catabolic process biological_process
GO:0006536 glutamate metabolic process biological_process
GO:0006547 histidine metabolic process biological_process
GO:0006548 histidine catabolic process biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004566 True 1488 mRNA 0.53 13 53826947 53848054

Neighbor

gene id symbol gene type direction distance location
AMCG00004564 NA coding upstream 107172 53717067 ~ 53719775 (+)
AMCG00004565 NA coding upstream 118980 53707094 ~ 53707967 (+)
AMCG00004555 NA coding upstream 531736 53293103 ~ 53295211 (+)
AMCG00004554 dlat,LOC106563967 coding upstream 542958 53273700 ~ 53283989 (+)
AMCG00004549 NA coding upstream 582217 53233791 ~ 53244730 (+)
AMCG00004568 NA coding downstream 1574 53849628 ~ 53863217 (+)
AMCG00004576 NA coding downstream 163795 54011849 ~ 54012342 (+)
AMCG00004577 NA coding downstream 168307 54016361 ~ 54024156 (+)
AMCG00004578 NA coding downstream 229110 54077164 ~ 54100748 (+)
AMCG00004580 aplp2,LOC102785027 coding downstream 409514 54257568 ~ 54281403 (+)
G9043 NA non-coding upstream 527075 53299663 ~ 53299872 (+)
G9000 NA non-coding upstream 681153 53145595 ~ 53145794 (+)
G8987 NA non-coding upstream 707251 53117197 ~ 53119696 (+)
G8982 NA non-coding upstream 719950 53106744 ~ 53106997 (+)
G8900 NA non-coding upstream 924165 52839448 ~ 52902782 (+)
G9160 NA non-coding downstream 16886 53864940 ~ 53866447 (+)
G9170 NA non-coding downstream 85115 53933169 ~ 53981983 (+)
G9191 NA non-coding downstream 164772 54012826 ~ 54013029 (+)
G9243 NA non-coding downstream 356167 54204221 ~ 54204990 (+)
G9244 NA non-coding downstream 357964 54206018 ~ 54206971 (+)
G9132 NA other upstream 59837 53766543 ~ 53767110 (+)
AMCG00004563 NA other upstream 156425 53636039 ~ 53670522 (+)
G9118 NA other upstream 219049 53603761 ~ 53607898 (+)
AMCG00004546 dixdc1,LOC107715327,LOC107693513 other upstream 556693 53259179 ~ 53270254 (+)
G9012 NA other upstream 642964 53183394 ~ 53183983 (+)
G9197 NA other downstream 183977 54032031 ~ 54033307 (+)
AMCG00004585 nfrkb,LOC107567165,LOC107715331,LOC107693532 other downstream 466068 54314122 ~ 54327599 (+)
AMCG00004588 NA other downstream 498448 54346502 ~ 54354976 (+)
G9300 sidt2 other downstream 546737 54394791 ~ 54395300 (+)
AMCG00004595 NA other downstream 621964 54470018 ~ 54482791 (+)

Expression


Co-expression Network