AMCG00004568


Basic Information

Item Value
gene id AMCG00004568
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53849628 ~ 53863217 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004568
ATGGAAGAAGAGTTGATACAGCAGAGCACATGTGTGGATTGTGTGTTCCAGGGTGGAGTGAGTGACGAGGTGACCCTGACTGCCTACATCGCTGCCGCCATGTTGGAACTGAACACCTCTGTGACGGAGCCCGTACTAAACAGCAGTCTGTCATGCCTGAGGGCTGCAGTCCACAACCTGACCAACACTTACGCTGCTACCCTGCTCGCCTACACCTTCACCCTGGCTGGGGAGGAGGACACCAGGGCCAGCCTTCTCGCCAAGCTGGATGTGCTGGACACCACTGAGGCTGACTCCCTGTCAGTAGAGATGAACTCCTATACTCTACTAGCACTCCTCAGCCACCAACCCCTGTCCTCCTCTGACCTGGGCCGCGCATCTAGGATCGTCAGCTGGCTGATCAAACAGCAGAATCCCTATGGAGGATTTTCTTCCACACAGGAGAAGGAGCTTCAGGACCTCCTGGGGGTGTACAGTGTGGAGGCAGAAGGCACAGGCTGTGCATCAATCCAGATCGCTCTCCACTACAACATCCACCCCCCTGCCGACTTTGTCAACTTCAACCTGACCTTGAAGGCTTATCGGCAATGCAACACCAGCAGTAATAACAGAGACCTCAGCCTCTTAGCCAGCTTAATTGGTGTCCAGCACATCCAGCTTGGCGAGAAGGCTGGCCCTGGTGTCCTCCTCCCCAGCCAGGGTGAAGGTGTAGGCGAGCAGGGCAGCAGCATAAGTGTTGGTCAGATTGTGGACTGCAGCCCTCAGGCATGA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004568 True 771 mRNA 0.56 6 53849628 53863217

Neighbor

gene id symbol gene type direction distance location
AMCG00004566 NA coding upstream 1574 53826947 ~ 53848054 (+)
AMCG00004564 NA coding upstream 129853 53717067 ~ 53719775 (+)
AMCG00004565 NA coding upstream 141661 53707094 ~ 53707967 (+)
AMCG00004555 NA coding upstream 554417 53293103 ~ 53295211 (+)
AMCG00004554 dlat,LOC106563967 coding upstream 565639 53273700 ~ 53283989 (+)
AMCG00004576 NA coding downstream 148632 54011849 ~ 54012342 (+)
AMCG00004577 NA coding downstream 153144 54016361 ~ 54024156 (+)
AMCG00004578 NA coding downstream 213947 54077164 ~ 54100748 (+)
AMCG00004580 aplp2,LOC102785027 coding downstream 394351 54257568 ~ 54281403 (+)
AMCG00004586 NA coding downstream 431717 54294934 ~ 54302577 (+)
G9043 NA non-coding upstream 549756 53299663 ~ 53299872 (+)
G9000 NA non-coding upstream 703834 53145595 ~ 53145794 (+)
G8987 NA non-coding upstream 729932 53117197 ~ 53119696 (+)
G8982 NA non-coding upstream 742631 53106744 ~ 53106997 (+)
G8900 NA non-coding upstream 946846 52839448 ~ 52902782 (+)
G9160 NA non-coding downstream 1723 53864940 ~ 53866447 (+)
G9170 NA non-coding downstream 69952 53933169 ~ 53981983 (+)
G9191 NA non-coding downstream 149609 54012826 ~ 54013029 (+)
G9243 NA non-coding downstream 341004 54204221 ~ 54204990 (+)
G9244 NA non-coding downstream 342801 54206018 ~ 54206971 (+)
G9128 NA other upstream 5769 53648011 ~ 53843859 (+)
G9132 NA other upstream 82518 53766543 ~ 53767110 (+)
AMCG00004563 NA other upstream 179106 53636039 ~ 53670522 (+)
G9118 NA other upstream 241730 53603761 ~ 53607898 (+)
AMCG00004546 dixdc1,LOC107715327,LOC107693513 other upstream 579374 53259179 ~ 53270254 (+)
G9197 NA other downstream 168814 54032031 ~ 54033307 (+)
AMCG00004585 nfrkb,LOC107567165,LOC107715331,LOC107693532 other downstream 450905 54314122 ~ 54327599 (+)
AMCG00004588 NA other downstream 483285 54346502 ~ 54354976 (+)
G9300 sidt2 other downstream 531574 54394791 ~ 54395300 (+)
AMCG00004595 NA other downstream 606801 54470018 ~ 54482791 (+)

Expression


Co-expression Network