G8371


Basic Information

Item Value
gene id G8371
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50137629 ~ 50139705 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU10334
atgacagAGGTGCATAAgttccagaaaaataaaagggaaaaaaataaacataaatgtagCTCTGGGATTGGAGTACAgaatgaaaaattaataaataacattagtaATTATTTCTAAACATtaatgcaatgaaaaacaaacacgtgACCAAAGGAAATACAAGCCCAAACCAATTTGTGCTACTCTTCATGGGAAAAAAAGGTCTTAAAGGGACATTTTTATCTTtactttccttttatttgtttgctttcttttttgtacaggctgcaggaaaacacatttaaaaaatgttaataaatgatTGCTTCCGTGTTCTAAtcttatttcaatttatttatatttaccaTCTATTCCAACAGAGGTTAAACTACACCTGCCAAAGAAAATCTTAACACTGATATATTATATGCATTgatattagttttatttctttcttttaagcaataataaatcattatcatcatcatcatcataataaaaatactcaCATCCTGCATTAAGTCATAGCAATCCCTGTAGTCAGATGGGCTAAACTGGGGGGTCTTTTGTGTGAAGCAGAAGACAAAAATGAAACTCCAGCTTAATGgcaaacagaataataacaaacaatagTAGTAAGGCATGAAACAAGGGATGCCTCCTGCCTGGCCTTATTCCCGTCACAGTAACGCTAAACAGTCCTGCAGTGTACTTCTGCTCGACAGGTCTCAAAACAACAACCGAAAAAGGCAAGCAATGGCAATGCCAGATATCCCTGTTAGTTTGTGTCACTCGGCAATGACCCCTCTCCCCACCCCAGTGTTCACACagcagaagagaaagagaagtgGGCTGGTTTGGGGATGAGTCGGGTTTTAATATGGGAAAGATCATATATTCTTGAAAGTCTCTCATCTTAATGACTAACATACCTGTTGAATTCAGATGCATGCTGGGATGAACGTGCCAATGTATACAAATATCTAAGCTATAGGCTGCTTTAAAAGTATGACCTGTGAGAGAATGGGGGGGTGGGTTTGTACTcctgaatgtttgttttatttggctcCAACTTAAAACTCTTTCCACATTCATCAGGTTTTCAATGTTAGTATAAACTCAGGTTTTGATTTAAAGGGATACACAGAGACGTTTCAGGCAATATAATATGGTACACCCGACATGATCTCCCTTAAAGTGTCATGGACTGGAGGACAGACCCAGAGAAATGTGAGGTgctgatggtggtggtggctTTCTGTCCTTTAGCTTCTCAGGTTCAACTCCCTGATGCTACTAAAGTGGCTactaaaatgacaaatataattatggGATGGTCGGTACCTTTAACACATGGACTGCCAATGCCTACGGATTTCAAAACGTTTTCCGCAAGGTGAAAGCAAAATGCACAAGAGGgtgaaaattaaaacaggaagaaagagaaacttctggcacaataaattaaaagataaattgtcctttgaaacaaacaaaaaccatcCAACACAAGATATGGGTGCCCCCTTGTGGCCAAAGTCAAACAGCAGTCATCCCTCACGCCCTCACTCCCCTCTTATTCCAGGAGAGACAGTGAGTTGTACTGCAGTAGGAGCTGGCAGGGGTGTTTTTGGAGCAGGCatactaaaatacaatgttacTCAGATGAGCAGGTTATGCTGAAAGCACACTGACTTCAGTCAAGCAAAAGTGGCCACTTAAATCAGGAGAGATTCATTAAAATTcaacttaaaaatgtacatcTATTGTTGATGACAGACTGTACTTCCTTTCAGGAGCATCCACTGAAGAGATGGAGCTTAATTGGTGAGTGAACAAAAAACCCAATCTTGTTCAGTGCtggaataaaactgaaaataataataagcagcagcaatcaaatcaaaacatagCAGAGCCGGGATATTTGGTTCTCAGCACCAAAACACTGGATGAGACATCAAAGCCTTTTACTATCAGAAGAAACTGTCACTAAACCACATTATGATAAGGGGAATGAAGGAATGGAAAAAAGGGGCCGAGCACCCAACAGAAAACGGGACattcatgttttcctttaaacGGGAGCAACGGATCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10334 True 2077 lncRNA 0.54 1 50137629 50139705

Neighbor

gene id symbol gene type direction distance location
AMCG00004458 NA coding upstream 1795 50121429 ~ 50135834 (+)
AMCG00004455 LOC107601691 coding upstream 105287 50004310 ~ 50032342 (+)
AMCG00004453 kmt2a coding upstream 147965 49989275 ~ 49989664 (+)
AMCG00004448 LOC108233819,LOC107098727 coding upstream 150138 49984727 ~ 49987491 (+)
AMCG00004450 ube4a coding upstream 154471 49968474 ~ 49983158 (+)
AMCG00004459 NA coding downstream 44997 50184702 ~ 50187493 (+)
AMCG00004462 slc37a4,LOC106612980,LOC107670393,LOC107593481 coding downstream 59800 50199505 ~ 50212190 (+)
AMCG00004464 rps25,LOC107758587,LOC107583381,LOC107679519,LOC107565279 coding downstream 72512 50212217 ~ 50214554 (+)
AMCG00004468 NA coding downstream 119126 50258831 ~ 50265447 (+)
AMCG00004469 tbrg1 coding downstream 132837 50272542 ~ 50281575 (+)
G8356 NA non-coding upstream 69548 50066435 ~ 50068081 (+)
G8188 NA non-coding upstream 551534 49582118 ~ 49586095 (+)
G8167 NA non-coding upstream 701878 49434043 ~ 49435751 (+)
G8140 NA non-coding upstream 889595 49246488 ~ 49248034 (+)
G8111 NA non-coding upstream 1108446 49024156 ~ 49029183 (+)
G8372 cbl,LOC107601723 non-coding downstream 3600 50143305 ~ 50144990 (+)
G8373 NA non-coding downstream 5666 50145371 ~ 50145823 (+)
G8374 NA non-coding downstream 8171 50147876 ~ 50148195 (+)
G8375 cbl non-coding downstream 9179 50148884 ~ 50149121 (+)
G8376 NA non-coding downstream 9620 50149325 ~ 50149542 (+)
AMCG00004449 NA other upstream 186096 49938552 ~ 49951533 (+)
AMCG00004442 NA other upstream 323605 49806361 ~ 49814024 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other upstream 818794 49298736 ~ 49318835 (+)
AMCG00004424 NA other upstream 1077574 49043590 ~ 49060055 (+)
G8099 NA other upstream 1203534 48932450 ~ 48934095 (+)
G8377 NA other downstream 11559 50151264 ~ 50157719 (+)
AMCG00004463 NA other downstream 96972 50236677 ~ 50243043 (+)
AMCG00004477 NA other downstream 601683 50741388 ~ 50753432 (+)
G8606 NA other downstream 975236 51114941 ~ 51115262 (+)
AMCG00004501 NA other downstream 1799844 51939549 ~ 51946818 (+)

Expression


Co-expression Network