G9160


Basic Information

Item Value
gene id G9160
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53864940 ~ 53866447 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU11346
aaacgtacaaaatcagcaggggatcaaatacttttttccctcactgtattccaTTTGCTACCTCCTTCTCCtgtaacattacaaaattaaagtatcaatttcacacacatattttaatataacctATGAAGTGATTCCAATTAATAAAGTATCAGTTAGGGCTGATCAATAAATCTCTCTTAATCTCTTTTCCTCCACTAAGAAATGGCATAAGGCAGACAGATCTTAACAAATCAGGCAATGTAAGATTTGTACACACAGTTTCCAGGAGGTGTACAATAATCACATTAAGGTTGACGGGTGCTAAAATGTTTGGCAGTCAAGAAGAAATAGGCAGAGGCTGGTTGTGTGGCATCCGATGTCCACAGCAGGGCACTTTGCCAACACAGAAATATGCTGCCACAGACTGTTGCTCTGTGGGGGCTTTCTGCCCTCTAGTGGAAAAATACTGAACCAACTCCTCCTACTCAAACTTGAAAAGAGGAACAAACATTACACGCTTGGGTACTGAGCAACGTGATGAAGTAGACCACAGTGATGAAATGGCATTATGGCAAACCTGGACAAATAAAGTGAAAccaatgtgattttaattttgaaagcaaaccAACTATTGTTCTAAATGCGATCGGCTTTCACAAACAGCACAGGGTATCCCCAAACACTGATATTAGCCTAAAATTATTGCATTATTGGTATATAATTGTTTGTGGgttagattacatttttcaaccacttcatttaaaactgatttaaaaaaaataacaaaaagtcTGCTGTAGTCATTTTTGCATCCTTTCCTGTGCCTGAAGCTCGGAACGCTGTTCATATGTCAACTTCTTCGCTCAATTATCCCATATTCAAAcggcatttgttttctgtacctCTCCCTCAAACACTGGACATTGACTCCAAATGACCCAGCCCACTCTGTTTTGACTGGGGACATAAggtaagggttagggttagggatcCATATGTTCAACATCAGACCTCACATGATGTGCATGAGGTATTGctgttttaatcctgtggttttcatatattcattcatgaaGAATCACACCACTTCATTTTAAAGTGATACcttatttaaattgttacatGGCTGTTGTCCACTCCTTCCCGATGACCATTTCCTTTAAACACGTGAAAATAGTGACCAGTCCAACAActttaataaaaactgcatataTCAGTAGAATGTTCCTCATATTATACAACACACCAATGTTCTTGTCTGTGCACATCTGAGCAAGTTAGCACCTTGTATGTCCCTTTTTGCAGAAAAGTGCCAATAGACAATTGGATTGAAAGGTCTACAGCGGATTTGGCTTTGATTGTCATGTTAGGGAACCAGCCCTTATTTTCTACATTAGTATTGCAGCTAATAGCATATAAATTCATATGAATCCATATAAATTCCAATGATGTAtgcactatatatttattttattttatttgtgaattgaCTGTTGAGTAAATTTAACTTGGAGATTGAAAGCTGG

Function

GO:

id name namespace
GO:0048513 animal organ development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11346 True 1508 lncRNA 0.54 1 53864940 53866447

Neighbor

gene id symbol gene type direction distance location
AMCG00004568 NA coding upstream 1723 53849628 ~ 53863217 (+)
AMCG00004566 NA coding upstream 16886 53826947 ~ 53848054 (+)
AMCG00004564 NA coding upstream 145165 53717067 ~ 53719775 (+)
AMCG00004565 NA coding upstream 156973 53707094 ~ 53707967 (+)
AMCG00004555 NA coding upstream 569729 53293103 ~ 53295211 (+)
AMCG00004576 NA coding downstream 145402 54011849 ~ 54012342 (+)
AMCG00004577 NA coding downstream 149914 54016361 ~ 54024156 (+)
AMCG00004578 NA coding downstream 210717 54077164 ~ 54100748 (+)
AMCG00004580 aplp2,LOC102785027 coding downstream 391121 54257568 ~ 54281403 (+)
AMCG00004586 NA coding downstream 428487 54294934 ~ 54302577 (+)
G9043 NA non-coding upstream 565068 53299663 ~ 53299872 (+)
G9000 NA non-coding upstream 719146 53145595 ~ 53145794 (+)
G8987 NA non-coding upstream 745244 53117197 ~ 53119696 (+)
G8982 NA non-coding upstream 757943 53106744 ~ 53106997 (+)
G8900 NA non-coding upstream 962158 52839448 ~ 52902782 (+)
G9170 NA non-coding downstream 66722 53933169 ~ 53981983 (+)
G9191 NA non-coding downstream 146379 54012826 ~ 54013029 (+)
G9243 NA non-coding downstream 337774 54204221 ~ 54204990 (+)
G9244 NA non-coding downstream 339571 54206018 ~ 54206971 (+)
G9245 NA non-coding downstream 340704 54207151 ~ 54207360 (+)
G9129 NA other upstream 3412 53677564 ~ 53861528 (+)
G9128 NA other upstream 21081 53648011 ~ 53843859 (+)
G9132 NA other upstream 97830 53766543 ~ 53767110 (+)
AMCG00004563 NA other upstream 194418 53636039 ~ 53670522 (+)
G9118 NA other upstream 257042 53603761 ~ 53607898 (+)
G9197 NA other downstream 165584 54032031 ~ 54033307 (+)
AMCG00004585 nfrkb,LOC107567165,LOC107715331,LOC107693532 other downstream 447675 54314122 ~ 54327599 (+)
AMCG00004588 NA other downstream 480055 54346502 ~ 54354976 (+)
G9300 sidt2 other downstream 528344 54394791 ~ 54395300 (+)
AMCG00004595 NA other downstream 603571 54470018 ~ 54482791 (+)

Expression


Co-expression Network