G3470 (pcmt1,LOC107554157)


Basic Information

Item Value
gene id G3470
gene name pcmt1,LOC107554157
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19175572 ~ 19180511 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4209
tgtttatttgtttaggtttttattttgtcattgttttcccTTGTATGAAAGCATGCTTTGAAGTATCAGATCAAAGCCAGGCATTTCTATGGTCAGGATTCACTCCACCTCGTATTTCTGGATTGATTCAGAATCGCCCGTGTGCTTTAATTACACCAGTGCTTTGCCCAAACAGCTGCATAACAGCGATGGCTCTCAAAGTCTATTTACATGAGAAAAGGAGTTTTACACTcaacctttttcttttatttacagaaatgaaATGCCACACCTGGAAAGCTGCAAGGGTGAGCATTTTATACAGGCAAgacatagaaataaataataaaggagGCTTGGTAATGTAAAGTGCTTATAATAACAACCACTTAACAACACATTGAAGattaaagaataacaaaagctttaaaaaaatctcattcCTCATACAGAACAGATTCTGTTGAAACACTCGTCTACGATATTCCTCTCCAGCTGGAATAAGGCGCACCGTTTCTAACCCAGCTCCTGTCTGAGACTCGTATGGCATTTGAAACCAAGAAtgaacagtgaaaacaaaacaaatgagggAATAGAGCAAGGGACGTCTATCTCCCCATCTTTTGATTACCTGTTCCAGATGGCTGCTCAGTGTTAATATCTAAATAtctcaaacaaaaaaacatggttcATTCTCTCATTTGACCCTTTGCAATTTTTGTCCATACTTTATATCAAGACTGTAAGAGTGagtgaataaatacaatccATGTTTTAGGTTacaatttttaacttttaatgtattttcaccaACAGACCATTTATTAAAGAGGATTTTAGATGTACATTTATCTTAAGCTGTCCATCATATCACCACCATATAGGTCATGCTTGCATACTATTCATATCCATTTGTTCCTAATTTAGAGGGGCTTTAAATAGCAGGTCTGTCTCAGGCGGCAGCTGAATTAAAAACCGCTTGCAGAATTCCAACAGGATTTAGCTGTTATTCTACCCCTAGATGTAAAAACAGAAGACATTTGCTTTGCGTTCAGATTTATTTGGCAAAGCAGCACTGCAGTTTACCGTCAGTCACTGGTACATCGCTTGCAAAGCATGTTACTAGTCATGTACATCATAGTCTGCATCCAATTCAgtacagaaaaagcaaaaaataaagcacaaaacTGATGAGCTCGTAACGCAGTGTATAGACAAGATTTCTCAGCATGTCAATCTGTACAGGAGATTCTACAGGTAACTAGAACAGCAATTCGTATACTgcatgttattttgtgttttgtttttgtttttgtttttaccataGAGAATAAGCTACAGAAAGAGAATAGCGGCTTTGCATTTGCAGTGTGCTTCTTGGTTTAAATAttgaaagcaggaaaaatgacTATTAGCATTGAGCGAGTGTTGTCTGCAGACAGAAATTGTAAGATGCACATGGTGTCTTAAGGTGCACATCAGCAAGTCGTAATAAAGGCTTTACACACTGCAGCAAAACAGTCCAGAAAGAAAGAGTTTTTCTCCAACTGAATGAATGAGTAATAAGATCtcattactgttatttattttagccaTAACTGGGCAAAATCTGTACCTTGCatccactttaaaaaaaaaaaaaaggtgcagGCATGAAAAATTTCCCAAATCCaaacttttccttttccttttaagTACAACTACTACATGTCTATTGTCCCGATCAGTTATGAGCTGCTCCACACCTctttatttgacaaaaaaaaaaagtcccgcaaaaaaaatgaaaactgatgcatttttttgtttttttttaatccaatagCTGCTTGAAACTGGAGAAGTCCATTCTgtttaataatgcaacacagGACAGGCTGATGCTGTTTCACAGTTCATCCCACCTGGACCACTGCTTGTCTTTGTCTGTTAAAGGCACGTATATCACCCCCATAAGAGGCTTCATTTTGGTGCTGCCATCTTCCAGCTTATCGTACTGCTCCAGCATCTGGTTTCCCCCAGCTGGGCCCACTGGAAGGATGAGCCGCCCGCCTGGCTTCAACTGGTCAAGGAGGCTTGTGGGACATTTGGTGCGGCCGCCCCCACATGAATGGCATCATACGGGGCTTCCTCTGGGAATCCCATTCGGCCGTCGCCTACTgtaatataagcacaataccgTATCAGCCTTTCAAACACAACAATCATCTAGCTGGTAACGTATCTTCTGAGAAACCCCAAACTggaattgtgtatttaattacgTATTTTATTTTCGTTTTTCTACAGACCCCTTAGGGATAGAGATGATGTTCTGATTAGtaattcatgtattattttaattagtccCAAGTTTGGGGTGCAAATTTCTAAAGACAAATGATGAAGAAACAGTATTtcactactactattatttaaatatttgtattaccatccatccatccatccattttcaatcaCTGCaatacacttattattattattgtccgACATTAAGGCACACTGAATTGCCATGGAAAAGATATCCCGTGCTCTTGTTTTCTTGGCTATCCTTTAAGTGATGAAATGTTATATCCTGAAAGCTCAAAGCACATTTTACAAAGCCACCATGATTTTGGTCAGGGTTACAATTGTAAGTGTAAAAAGTTACTAATATGATCAAATTAAACcgaaaaacaaatactttactTATAAACTCCTACCAACACATGAggacatatttatataaaccaatcattttagaaACTGTGATGACCATCCTTTTAGTATACAACAACAGTGTTTCAGCTGGGATTTTATTCCTCTGTGGTTACAACCACTCCTTACCACTGCTATACAGTCATTATTAGAAGACATGATCCTATTTTTCATGTTCGCAAAGTGGGAAACCGTGCAAAGATCACATTTGCGTAGGACTGTGATTCatggttttggaaaaaaaatactgtgatCAGATGCTTAGCAGCACAGAGATGTAAATTGTTCATTAGCTGCAGTTGGTTTGATCACAGCTCTGATTAAGGACTCCAGAACTcccataataaaacaaaacaacataaacaaaatctGTACAATAAGtcttaatattaattatgaatACTATAACAATCAAATAAGGAAGACATGAATAAAACTAAAGATATATCAATTTTGTTCTACACGTTACAAATCATGTAATGCAAACTAGCATTTCCAGTACTATCAATAAAAGCCTTGTCATAATGTTTACTGATACTACtacaataaaaagtattgtACTACATACAATCAGCAAATGGTGACACAAACTCCTGAAAATGCTGCTGTGATAATGCTACCAAGAACAACgaattatctgtattattttaggTCTGATTTGACcctttaatattgttttgtcaaagaatttaagaaaaatgcagGTTTAAGTTTGATTTATATCTGGGATAACCAGCTCTACTTTTAAACACATAAGATTCTTCACTGGAAAATCATATTAAGAGTGACtttaatacaaacaattaaaaaatgatggtcataggtaataaaaactacaCTTACTTACCAACCAGTTTTACTCTTCCAGATGTTATCAATGTAGGGTCATCTTTCTTTACATTGTTTATCGAATCATCTACAAGCTCCTTAATGTGGTCAATTCCTATGACTTTTCCCTTGGGACCCACCTGCACAAAAGATGCAACGTGG

Function

symbol description
pcmt1 Enables protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Involved in protein methylation. Located in cytosol. Biomarker of Alzheimer's disease and malignant astrocytoma.

NR:

description
PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4209 True 3666 lncRNA 0.36 3 19175572 19180511

Neighbor

gene id symbol gene type direction distance location
AMCG00003818 lats1,LOC107742997 coding downstream 5921 19152616 ~ 19169651 (-)
AMCG00003820 katna1 coding downstream 25410 19142919 ~ 19150162 (-)
AMCG00003819 ppil4 coding downstream 43720 19119815 ~ 19131852 (-)
AMCG00003817 NA coding downstream 77260 19089198 ~ 19098312 (-)
AMCG00003808 amd1,dcam coding downstream 204477 18951252 ~ 18971095 (-)
AMCG00003821 NA coding upstream 168 19180679 ~ 19196676 (-)
AMCG00003822 map3k5 coding upstream 21152 19201663 ~ 19240595 (-)
AMCG00003823 ctgf,LOC106571301,LOC107683930,LOC107737382 coding upstream 103485 19283996 ~ 19287183 (-)
AMCG00003824 NA coding upstream 207854 19388365 ~ 19390719 (-)
AMCG00003829 NA coding upstream 294378 19474889 ~ 19478369 (-)
G3405 NA non-coding downstream 88880 19084704 ~ 19086692 (-)
G3403 NA non-coding downstream 95907 19079434 ~ 19079665 (-)
G3402 NA non-coding downstream 97708 19077456 ~ 19077864 (-)
G3395 NA non-coding downstream 129367 19045807 ~ 19046205 (-)
G3374 NA non-coding downstream 225320 18949772 ~ 18950252 (-)
G3482 NA non-coding upstream 176134 19356645 ~ 19357239 (-)
G3535 NA non-coding upstream 532324 19712835 ~ 19713052 (-)
G3552 NA non-coding upstream 719458 19899969 ~ 19900381 (-)
G3553 NA non-coding upstream 721571 19902082 ~ 19903092 (-)
G3554 NA non-coding upstream 727519 19908030 ~ 19908341 (-)
AMCG00003782 ctsb other downstream 1023191 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 1032891 18135379 ~ 18142681 (-)
G3181 NA other downstream 1230630 17942577 ~ 17944942 (-)
AMCG00003751 NA other downstream 2035190 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 2304097 16868332 ~ 16871475 (-)
AMCG00003825 NA other upstream 181307 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 244452 19424963 ~ 19425366 (-)
G3523 NA other upstream 263505 19444016 ~ 19506753 (-)
AMCG00003893 NA other upstream 4349008 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 4560074 23740585 ~ 23757796 (-)

Expression


Co-expression Network