G3845


Basic Information

Item Value
gene id G3845
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22076992 ~ 22077458 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4660
attatgaccactgacaggtgaagtgaataacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcaaggttgatgtgttagaagcaggaaaaatgggcaagcgtaagaatctgagcgactttgacaagggccaaattgtgatggctagacgactgggtcagagtatctccaaaactgcagctcttgtggggtgttcctggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacaaggtcatgggcggccaaggctcactgatgcacgtggggagcgaaggctgtcccgtgtggtctgatccaacagacgagctactgtagctgaaattgctgaaaaagtcaATGCTGGTTCTAATAGAAAGGTGTCTGAACACACattgcatcgcagtttgttgcgtatg

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process

KEGG:

id description
ko00910 Nitrogen metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU4660 True 467 lncRNA 0.38 1 22076992 22077458

Neighbor

gene id symbol gene type direction distance location
AMCG00003856 NA coding upstream 95402 21970496 ~ 21981590 (+)
AMCG00003855 NA coding upstream 118007 21950331 ~ 21958985 (+)
AMCG00003854 NA coding upstream 214193 21857490 ~ 21862799 (+)
AMCG00003847 NA coding upstream 541234 21491884 ~ 21535758 (+)
AMCG00003846 NA coding upstream 629871 21440114 ~ 21447121 (+)
AMCG00003861 NA coding downstream 23830 22101288 ~ 22106730 (+)
AMCG00003873 NA coding downstream 397629 22475087 ~ 22498055 (+)
AMCG00003871 NA coding downstream 436277 22513735 ~ 22523525 (+)
AMCG00003872 NA coding downstream 450901 22528359 ~ 22536293 (+)
AMCG00003876 NA coding downstream 746312 22823770 ~ 22829038 (+)
G3798 NA non-coding upstream 60540 21917276 ~ 22016452 (+)
G3770 NA non-coding upstream 317193 21750527 ~ 21759799 (+)
G3767 NA non-coding upstream 344293 21732491 ~ 21732699 (+)
G3757 NA non-coding upstream 476132 21600632 ~ 21600860 (+)
G3754 NA non-coding upstream 478562 21595856 ~ 21598430 (+)
G3863 NA non-coding downstream 92882 22170340 ~ 22172105 (+)
G3871 NA non-coding downstream 105785 22183243 ~ 22184811 (+)
G3878 NA non-coding downstream 119856 22197314 ~ 22200678 (+)
G3884 NA non-coding downstream 147260 22224718 ~ 22225101 (+)
G3886 NA non-coding downstream 158638 22236096 ~ 22240098 (+)
G3799 med23 other upstream 153205 21922636 ~ 21923787 (+)
AMCG00003853 NA other upstream 175127 21890523 ~ 21901865 (+)
G3771 NA other upstream 316362 21745850 ~ 21760630 (+)
G3751 NA other upstream 527459 21549201 ~ 21549533 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 2679306 19271965 ~ 19397686 (+)
AMCG00003874 NA other downstream 605558 22683016 ~ 22769227 (+)
AMCG00003884 NA other downstream 1255143 23332601 ~ 23338241 (+)
AMCG00003891 NA other downstream 1444368 23521826 ~ 23533875 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other downstream 1632571 23710029 ~ 23726144 (+)
AMCG00003902 NA other downstream 1761131 23838589 ~ 24042885 (+)

Expression


Co-expression Network