G3878


Basic Information

Item Value
gene id G3878
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22197314 ~ 22200678 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4697
TCACGAGTTCAATGTGTTGAcctggcctccaaattccccagatctcaatccaatcgagcatctgtgggatgtgctggacaaacaagtccgatctgtggaggccccacctcacaacttacaggacttaaaggatctgctgctaatgtcttggtgccggataccacagcacaccttcagaggtctagtggagtccatgccacgatgggtcagggcttcttttgggacctacacaatattaggcaggtggttataatgttatggctgatcagtataTATAATCTCTACGTTCTAGAAGTTCTCAGGTAAATTAttgcaattgtattttattaacttaaaacaaatcaaattctACATGAATCAGGTTAGCCAATTAATGTGCTGTTTGTATTggtcaaaaatatatttttactgaCCCTGTAACCGTCAGGATTCAAGAATCGGGATTAACTGTTTAATCACCATTCAGTAAGAAAGTGAAATTGtacattgtatatattgaaggtagattacatttttcatcagtagcctttatctttaaaatgtcatatatGCTATGTTTCATATAAtcattgtttgtttctgatttttttaatgccatgttgttttaataattgaGCCAAATTATTATGGCATGATCAGATGTTTACTGTGGATGCTAGGTTATCTGTTAGTAATGTCCTGTGCAAGTGTAGTTGGGTACAATCAAGGATTTAGGGAGTGTGATGATTTACACAGttgtaaaaatatttcagaaaatgggGACAGTGAAAAGTGTTACCACCACAGATCAAGGTCTTTGAGGTTTTAGTGGAAATTTGCACACATGCATTTTGCCACTTAGTGCAACATGGGCCAAATCTCGTCtcacgtaaaaaaaaaatgttaccttTTCTCTTTTGTGATGCTTAAGCATAGATGTGTTTAGTGGGTGTGGTTGTGGGGGTGTGTGTCCTCCACAAAATAGATCAATTTTGAAGTCCAGTTTGAATTTTGCAAACAATTCCCTCATCTAAAACAAGGCATCCAAATACATGTTAAATCTTTGTAAGTGTTTAACGTAGCGAGGGAAAGAAACCAATCAATGGTCAGTTAAAGTGTTAAAATCAGTGGAGATGATTGTTCAACTTAGAGCTACTATTCCTCTGTTCAATGTATTTGTTGGTTAATGCCCTACTTAATCATTGATTCTTGAAAAAGGAATGATGTATAAGTGTCAACATACAGCTTTAAATCCCAACCATACAAGTGtatcaaagctttttttaatttttccataGACCTGCACTCCAGTTAAGTACCTGCAAAATTGGTCCTCAAGCCAACTATTGCTGCTGTGGGTTGATACTTTTTACTTTATGCTATATACATCTAACTGAAGAACATTGTCCAAATGATAGTCAATATCTGCTTAGACAAAGATTAGTAGTTACACTTGtatgaaatatttttatatgtagcCCAATAactgtttgctttgtttctagAAACAGTACACTGACAGTCATTGATCATTGTGAAAGACTAATACAGGATAAAAATGTCTCAACTACACTTCAGATCATTCTTTACCATGTTTTCCTACTAAACGTTATAGCAGTGCATTCCAAAGGCTGATTACGTTCCTTGATCCTTTGCACAGATGgtgtcgttttgttttgttgtttctataCTATAGGACTCCTTAAACAATAGCAGCACATAAACATCAAGCTTTGAGTATTTTTAGTAGCCACTTTAGAACTGTTACATAGGCAAGAGCTGTAGTGAGTTCAGCTAGTGCTGTTCACTGCTTGTGTCATCCAATACTACCTTTGGCAtaaatagttttagttttttcctatGGCTATTGTTCAGGGTACAGAATTGTATTTGCTCAGAATAAAACACTTCCGTTTCATTGCTCCTGTGATAAAGATATAGCAGAGAACATTGTTTCAAAACTTGTCTCAAGGTTATCAGAACCAAACTGTAACAATAACTTGATATTTTGGAATTTGAAACAGTCTTCTCACATAAttaaactaaagaaaacaacttgatatataatttactgattgattcaaaaaacaaactggacATTGGATGGAGgaagcattattttaaatttttggcttttttattttacaaacatttttgatAAATTTCCAACCTCTTAGTCCCTTTTTGTTACATAATATTCTGCCTATAAGAAAAGGCAAAATGTAGCTGCTTGCAGAAGTGCCACTATGGTGTTGTTACAGTAATTAGCTTTAGTGccttatttaaagttaaattatggaattcatttactgtataaccaaggtTAATATGTGGTGAATTTAATCTAGAAAGCTCATAATTGGGAGTAAGCACATAATGTCCATGTtcaatttatatacacacacgtagtatttttttggggggtggggggggtttctTCTGTTTATATGTGGTAGTATGGAAAGGTATTGctgcaaacacagagagaaagaaaaataacattttgaggGCCACTgctacagatttttttttgtaatttttttgttgtttccatGAAAAAAAGGTGTTTTACTCTGagaccatttgtagttcttatgcGTAATCTCATGATATGACAGGAATGATAGGAACTTAAACTACATTGATCTGGCAAGTCGTTCTAAAAACGCGTCTGTTAAatttcattgtgttgtgttttcataaaacaaaaagaaaatgctgccACAAAATATACTACTTAGAATCATGTACCAGACACATTCAACAGGGCTTTGTGGAAACTCAAGCCACCATCAGACACCTTCACACACTGGATCCTGAAGGAGTCATGTTAGAAAGTGTCACATAAGTTATAGTTTATTAAGTTTCTATCCTTTCTATCAAGTTCTGTCACATCTCGAGAttacccataagaactacacattttttttcccacgGCAACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4697 True 2922 lncRNA 0.52 2 22197314 22200678

Neighbor

gene id symbol gene type direction distance location
AMCG00003861 NA coding upstream 90584 22101288 ~ 22106730 (+)
AMCG00003856 NA coding upstream 215724 21970496 ~ 21981590 (+)
AMCG00003855 NA coding upstream 238329 21950331 ~ 21958985 (+)
AMCG00003854 NA coding upstream 334515 21857490 ~ 21862799 (+)
AMCG00003847 NA coding upstream 661556 21491884 ~ 21535758 (+)
AMCG00003873 NA coding downstream 274409 22475087 ~ 22498055 (+)
AMCG00003871 NA coding downstream 313057 22513735 ~ 22523525 (+)
AMCG00003872 NA coding downstream 327681 22528359 ~ 22536293 (+)
AMCG00003876 NA coding downstream 623092 22823770 ~ 22829038 (+)
AMCG00003878 hbs1l,LOC107756395 coding downstream 643665 22844343 ~ 22859805 (+)
G3871 NA non-coding upstream 12503 22183243 ~ 22184811 (+)
G3863 NA non-coding upstream 25209 22170340 ~ 22172105 (+)
G3845 NA non-coding upstream 119856 22076992 ~ 22077458 (+)
G3798 NA non-coding upstream 180862 21917276 ~ 22016452 (+)
G3770 NA non-coding upstream 437515 21750527 ~ 21759799 (+)
G3884 NA non-coding downstream 24040 22224718 ~ 22225101 (+)
G3886 NA non-coding downstream 35418 22236096 ~ 22240098 (+)
G3907 NA non-coding downstream 201926 22402604 ~ 22404854 (+)
G3914 NA non-coding downstream 299849 22500527 ~ 22500826 (+)
G3915 NA non-coding downstream 300239 22500917 ~ 22501829 (+)
G3799 med23 other upstream 273527 21922636 ~ 21923787 (+)
AMCG00003853 NA other upstream 295449 21890523 ~ 21901865 (+)
G3771 NA other upstream 436684 21745850 ~ 21760630 (+)
G3751 NA other upstream 647781 21549201 ~ 21549533 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 2799628 19271965 ~ 19397686 (+)
AMCG00003874 NA other downstream 482338 22683016 ~ 22769227 (+)
AMCG00003884 NA other downstream 1131923 23332601 ~ 23338241 (+)
AMCG00003891 NA other downstream 1321148 23521826 ~ 23533875 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other downstream 1509351 23710029 ~ 23726144 (+)
AMCG00003902 NA other downstream 1637911 23838589 ~ 24042885 (+)

Expression


Co-expression Network