G3907


Basic Information

Item Value
gene id G3907
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22402604 ~ 22404854 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4730
GTATGCTGCAGTACAGATCTATGCCAGAAAGATCAACTCAGACCACCTTCTTTAcataacatatattaaaaaaataaaatgattaccTGAATCATGGTCCATGAATTGTCCTTATTTGGAGTCAGTGCTTGAATGCTGGTCACAtgcttcaaaaacacatttaaataatgggTCTAGGCAGATTTCTGTTCTTTTGCCTTTATTGTAAGCAAAACAACTCTTAAATaccatacattacattaaaaaaaatacaataaaaaaagaaaaagaagcttGCTGATGTACAGAACAAacatacagaaacattttttgtccTGTAGAAATCTGTGAATTTCAAAATCACtcaaggtatatatatatattaaaaaataataataatcagggcAAATGCTCTCCTTTAAATTTTATGTAAGAgtacatgcaaattaaaaattctTGTAATACATTACCAGCTCTTCAAAATGCCAACAGTGTGGAAATGgaacaaagataaataaataaaatgaacccACCACCACCCTGTTTAGAGCAGTATCTTTACACCAAGATAACAAACATTCCTGAATGTgaacattaaatatgtaattgcattttattaatactgtCAACACTATTTTAAAGCCCTGAAAGCTGTAAAACAAAGTAACCCGGTAcggaaaataaaactgtattatgaaaataaaactaaatcagcACCATATTTTCCCTCCAAAAAGGCATTCTAACGGAGAAGAATTGGAAAACTACAATAGCAAAGAAGATAATCTGTTTTATGAAATCCCCAAACAGAGAGAGTCAAGAACTCTGGATGTTAAATCCACATTAGTACCAAGATAAGCAGCAAGCATTTATGGTAATACGTTCAAAGTTTCACAGTCATAAAATTGTAGCAAAATctttcattacttttatttatttatgaacaaCAAGTTAGTTttaattctggaaaaaaaaagaaaaaaaaaagctcttccCCATTCCATTTACCTaacacttaataaaatacatttccagcaTCTTCTTTGGCAGCTTACCATAAAATATGGTTAAGAAAAATGTTATCTTAATAGCCATTGATAAGGAGTGCATTAGCatgaaaatggaaatatataatctttacATATAATTCTCACAATACACACTGTCCCTGCTGTAACACTCCTTGTCATCCAGCTGAACAATGGAGTGGATCATTAATACATTGCACATGGTTCCAAGCTACATGTGTTAAAATCTCTTAACTCGTAAGAAATGCTCCACAAATGTGGGCCTATACCATCTCTTTATAACAAATTTAGATATTACAATTAAAGATTTTCTAAAAAAGGGCCTCCCATGCTTTGATGTGCTTTCCATTTCTGGCTATGATTCTTACACAATCAGTGTGAACAGAAGTATGGTAAGGCTATCAGAGGTTTGTGAACTTATAAACTTACATACCACGTGTCCTCCAACACCTGGCAGTTGAGCGTCTTGTGCTTGTGTTCACCATAAAAGGTCATTGTTGTACGTATTGtagtaaagaaaacattaaatatgaataatctACAACACAGATTTataatgggggggaaaaaaacaaacacaaactaattTTACAGAACTGACTGAAGAAACTATACTGCTTTCAATCTATATGATGAACAGTATATTGGACAAGGTGTTCTGATATGTTGgtatgagaagaaaaaaatatatattgccaATTTCATAAtctgaataaaaagaaaattacttaAAATCGACCAAATAGATCACAGTGGAAGTTCTTAGCATTGACAAGTTCAAGAGAACTAATCATAGTGCTTTCCCCAACCCCATTTGAGCTGCTATACCTATCATTCTTTGTTCTGAGTTTCAGCTTTTCAAACTTAAAATGACAGACAGGAGAAAGGGAAAGCAAAGGGGCTCTAGACTTGACTTCTtgccaaaaaactaaattttaaaacttcaaaaacaccacagttaaattaaaaacgtcctttaaatagctttttctttttttgcttttgtacaAATAGTTCCTCAAAAACcgttaaaaaaagcacatgagGATCTGAAGTCAAGAGTCCATTTTGtggttttgatttctcagttaTGGCTGATGGGTGGTTGATCGTTTCAGGCCACCATTATAAGCCCTTCTTTTGAGGAGCACTTAGTTTTCTCATCCCTCTTATCCGGGACAA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU4730 True 2189 lncRNA 0.33 2 22402604 22404854

Neighbor

gene id symbol gene type direction distance location
AMCG00003861 NA coding upstream 295874 22101288 ~ 22106730 (+)
AMCG00003856 NA coding upstream 421014 21970496 ~ 21981590 (+)
AMCG00003855 NA coding upstream 443619 21950331 ~ 21958985 (+)
AMCG00003854 NA coding upstream 539805 21857490 ~ 21862799 (+)
AMCG00003847 NA coding upstream 866846 21491884 ~ 21535758 (+)
AMCG00003873 NA coding downstream 70233 22475087 ~ 22498055 (+)
AMCG00003871 NA coding downstream 108881 22513735 ~ 22523525 (+)
AMCG00003872 NA coding downstream 123505 22528359 ~ 22536293 (+)
AMCG00003876 NA coding downstream 418916 22823770 ~ 22829038 (+)
AMCG00003878 hbs1l,LOC107756395 coding downstream 439489 22844343 ~ 22859805 (+)
G3886 NA non-coding upstream 162506 22236096 ~ 22240098 (+)
G3884 NA non-coding upstream 177503 22224718 ~ 22225101 (+)
G3878 NA non-coding upstream 201926 22197314 ~ 22200678 (+)
G3871 NA non-coding upstream 217793 22183243 ~ 22184811 (+)
G3863 NA non-coding upstream 230499 22170340 ~ 22172105 (+)
G3914 NA non-coding downstream 95673 22500527 ~ 22500826 (+)
G3915 NA non-coding downstream 96063 22500917 ~ 22501829 (+)
G3991 NA non-coding downstream 464024 22868878 ~ 22869139 (+)
G4057 NA non-coding downstream 861416 23266270 ~ 23345005 (+)
G4059 NA non-coding downstream 910480 23315334 ~ 23322675 (+)
G3799 med23 other upstream 478817 21922636 ~ 21923787 (+)
AMCG00003853 NA other upstream 500739 21890523 ~ 21901865 (+)
G3771 NA other upstream 641974 21745850 ~ 21760630 (+)
G3751 NA other upstream 853071 21549201 ~ 21549533 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 3004918 19271965 ~ 19397686 (+)
AMCG00003874 NA other downstream 278162 22683016 ~ 22769227 (+)
AMCG00003884 NA other downstream 927747 23332601 ~ 23338241 (+)
AMCG00003891 NA other downstream 1116972 23521826 ~ 23533875 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other downstream 1305175 23710029 ~ 23726144 (+)
AMCG00003902 NA other downstream 1433735 23838589 ~ 24042885 (+)

Expression


Co-expression Network