G3915


Basic Information

Item Value
gene id G3915
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22500917 ~ 22501829 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4741
CCCTGTTGGGCGAGTGCTCAGACAGGGCAGAGAGCAGGGTGATGGCAGATTCGGCCACAGGCTGAGATGGAGATTGAAGCATCTCCCTCAGCTGAGCCACAAAGCCCAGAGACACCAGCTCCTCCTGTATGCTCACTGGGGTGGAGGAAACGCACCGCGTCATTGAACAGACCAAGCCTCCACTGAACACcctttgtgtttaatgttgaatgtttaattatttttttaccttaatACATTTCTCCATGTCAAGATGACAAATACACATTacactattgttttaaaacaatctgcCATCAACAGACTTCACATGGTAGCTTTTGCACACACAGGAAGAATAGGCTGTTATTTTGCCATAAATAAAGAGAGGTTAAATGGAGATTCAATTGCTTGTGTTAAATCACTGGGGATCTGAGTTTCAAAGACACATGGGTTATAAATGAATCGTCAAACAGACGTCTCCTTTTCTCACACTGTTCGTTGACCACTCAATACTTTGTAAGCACTGAAAAGAGATGGAACAACTTTTACTCATGTTTCACACAAGCAATACTTTAAATTCCTGTCAATTCAGGACTTCTCATAAGCACCACAAATTTTAATAAgatatcaaaaatgtatatgcaaaactttcaaaatgtgttgaTCTGATTTTACCATTCACAGACAAGTTCCTGAGACATCGACAGGACTGACAGGAATTCTGTAAAATGGAGATTgagttttaataaagaaatgagATTATATTAAACCCATGATTAAAGTTACTTCATGTGATAACTAATCTAGATCTTTGTGATAAAATGGAAGTATTATCATGATACAAGAAAAGCATATTTAGAATTGTGGTGCacatgtattatgtaaaattaGGAAGTCTTGTAAATCTATATTTCCAATAAATGCTAACAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4741 True 913 lncRNA 0.43 1 22500917 22501829

Neighbor

gene id symbol gene type direction distance location
AMCG00003873 NA coding upstream 2862 22475087 ~ 22498055 (+)
AMCG00003861 NA coding upstream 394187 22101288 ~ 22106730 (+)
AMCG00003856 NA coding upstream 519327 21970496 ~ 21981590 (+)
AMCG00003855 NA coding upstream 541932 21950331 ~ 21958985 (+)
AMCG00003854 NA coding upstream 638118 21857490 ~ 21862799 (+)
AMCG00003871 NA coding downstream 11906 22513735 ~ 22523525 (+)
AMCG00003872 NA coding downstream 26530 22528359 ~ 22536293 (+)
AMCG00003876 NA coding downstream 321941 22823770 ~ 22829038 (+)
AMCG00003878 hbs1l,LOC107756395 coding downstream 342514 22844343 ~ 22859805 (+)
AMCG00003877 LOC107571660 coding downstream 369676 22871505 ~ 22882861 (+)
G3914 NA non-coding upstream 91 22500527 ~ 22500826 (+)
G3907 NA non-coding upstream 96063 22402604 ~ 22404854 (+)
G3886 NA non-coding upstream 260819 22236096 ~ 22240098 (+)
G3884 NA non-coding upstream 275816 22224718 ~ 22225101 (+)
G3878 NA non-coding upstream 300239 22197314 ~ 22200678 (+)
G3991 NA non-coding downstream 367049 22868878 ~ 22869139 (+)
G4057 NA non-coding downstream 764441 23266270 ~ 23345005 (+)
G4059 NA non-coding downstream 813505 23315334 ~ 23322675 (+)
G4058 NA non-coding downstream 813799 23315628 ~ 23319122 (+)
G4071 NA non-coding downstream 860207 23362036 ~ 23362447 (+)
G3799 med23 other upstream 577130 21922636 ~ 21923787 (+)
AMCG00003853 NA other upstream 599052 21890523 ~ 21901865 (+)
G3771 NA other upstream 740287 21745850 ~ 21760630 (+)
G3751 NA other upstream 951384 21549201 ~ 21549533 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 3103231 19271965 ~ 19397686 (+)
AMCG00003874 NA other downstream 181187 22683016 ~ 22769227 (+)
AMCG00003884 NA other downstream 830772 23332601 ~ 23338241 (+)
AMCG00003891 NA other downstream 1019997 23521826 ~ 23533875 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other downstream 1208200 23710029 ~ 23726144 (+)
AMCG00003902 NA other downstream 1336760 23838589 ~ 24042885 (+)

Expression


Co-expression Network