G4358 (epm2a)


Basic Information

Item Value
gene id G4358
gene name epm2a
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24657907 ~ 24662781 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU5309
TTTTATCCTTACCATGCAGATGCGAAAACATGTCTGTAGAATATCATCTGTCGGGTTTTTAAAATTAGACTAATATTGAGTGGATAGGAGTCTTCAAACAGCAATGTTAATTcactttcttcttcattttcaaaatcataaatcatCTTACGTGCCCTATTTGAACATATTTTGCTTCTGAAATTATTGACTTAAATTATTCTCTACTGTTCATGGCAATAtggttcatatttatatatatgtagtgtttGTCCGTTAAATTGCACTCTGAAGATctaattttaatgataattaaataaatcctcaCTGTCTCCACTTCGCTGAAGTACTGCTGGACACTTGGCTTCTCTTACTGACAGATTAAATCACACACAGGGACCAATCTTGCCCCCTGAATCTCTTCAGACAGAGGACCCTTCCATGTCTTTCTGTCAGACAGAGAAACTTTACATGATGTCTCATGGGGGGGTTGTTCATATGAGAATTTATCCAACAATGTGATTCCTCttggtgaaaatgttaaataagattaagaaattgattaattatttattgcacGTACGAGATCCTTgatagttaaacaaaaaaatacagggTTAAGAGATAGGTGTAATTTATATCCAgttttcacaaatacaaatacaagtgcATGACCAAAGAGGAGATTGCAGAATGAGAACAAACTATTTCCACAAAAACCTGAAATACTACTCACTTAATATCTATAGACttaatacagaacagaaaacacaaatgataCAGTTGGGAGCTGAACTAAAGGCTATAACAAAAAATCGTTTACCTGCTCCTTTCagcaaaatatcacattttaaattgaatacacTATTTTATTCTACAGGGATACACAAGAAACAACCCTGTGGTGTTGTGTTTTACTACAATGATGCCAAAAAACCTTCAAcatcatactgtatattaaaatcagAATCTAAATATGCACTGTTCTTAGTAATGCCATTCATGTTATATTGCATTTCGAAACATTGTTTCACCCTATAAAAGTGTGCTTTAGGTTTCAAAAGCAATATCAAATTTGCAGTCTTCTCACATAAACTATAAAAATCCATATTCACCTTTGCTGAACTttggttattattttcaatacaaaactTTTATAACATGTAACACCAGCAAAACACAGGAAGACCCGTCAGTGCTTCTTTTTCCAGATTATTCTACCGTTAGGTGTCGGTTCAACAGTGTATATTTATCATGATAAATGATTGCACATTTCATATGGTAGGCATGGCTGCACGTTTGTTTCTGTTGCTGAATACAGGAATCTGTTCAGGATTGATGTTAACGTGCCAGAAAGTGCCAGAACCTTGCAAATCAATGAATCTCATGTTCAGACACTCAAACGCTTACCTAGAAAAATAATTCTGACAGCTccttgaaaaacattttctggaaATAAGCAGTAGATGTGCATGCTTATCCCATTTTCTTGAAAAGAAAATCCTAAGTCTTTGATTCTCCACTGTCCTGCATTTTGAATTAACTGTTCTTGTttatcttgtttatttgaatgaaacagTAATTAATTtccacacacttttttttttttttaaactgctcgCCCTCCTTTGAAGCAGATTAGTTTTCTTCTGCCCTTGGCTTCATTAGCCTGTTTTCAAAACTTATTTGggaaaatgaatatgaatttcTCCAAGGGTCTCTAATCTGCATCACAGCACAGACAAATAAGATCCCTTGCTATCTCTTAATTTCTCCTTGTTTTGGGGTTGTTTATCGGCATGTTTAAAAGCCTCATGATGCCACAAAAAGTAACTCGGTTAAGTCTTTAGAGTTATGCAGTTTTCTGTAATTCGGCTGAGATTTTAAACAGATGGCAAAGAAGTTATTTTAGAcagccaaaaacaaaaccatggtAACAAAACAGCTAAACATGTTTTACGTGAaggttattaatatatttttttcagttgtaaatataattgaatgaatctgaaatgttcagtttatatataaacaattgaATATGCATACAAtctaacatttaataaaacttaaattaacTAAACTTATCTAAAAAGTTAAGTGTTTATCTTATAAGGTCAAAAACCCATCTTAGAAAGTATAGAGCTATTTTGGAATTAATGTGCAAAGTaggatattttgtttctgttaaaacCCACTAGCATTTTACAGGTATGTTTTCAATAGGACATCAAAATACTGATTCAGTTGCCAAATGGATTTGTCAAATTATGGTGTCAGTTTCAATAAGATTCACAACTTCATATGAAAGCCTGATAATGGCTTCTCAAAATGTACTGACAATAGCACCCTGTtcttacatattattttttatatcaggAAATAGGAAATGCACTAcattacaaataagagcaaatGTTACTCCATCCATGCTTCTTCTGTCTTGATCGAAAAACGTGTGAAGATTATTCTAGAAGTGTCCTTGTTTAAACTGGTTTTAGTTTTGACTGGTTTGCTGAAAGCATATTATCCTGTATATGCATCATATTTTCTGATGTTTGTCTCctggttgtgaagcaaataataataaaaaacacagaggGAAGCTAAAAATAGTCTGTTTAGCATTTACATCACCAAGCACTCAGATACCTGAATTGATCCCCAAAAAATCCCTGTGTGAATTGTTCATTCCCAGAATATATGATCTCTTACTAGTCCATCCATTTAGctttgctgaaaatgtatttggatcAATAAAAAGGAGCTTTTACTAAAAGCATTGCTGggctattttaaaaattattttgtgtatttacaaaaataagatCTATTCCATGTCATTTAATGCTTCCAAGAACCTCAAAATTAACTTTCcataatgcaaatacaatacagtaccaTACAACtcttataaatacaatacaatacattgaaaataacaggaTATTTCTAGAACTTAAACTATTGCTGATGACGCTAAAAACGTAGACCTGAATCCTACTGTTCCAATATGTATGTCACAGAACAACTGAGGAAATCGTCAATCATAGAAACCgcataaatattaacatttaacttgtattttgtttgttttgtctttatgcactgtgattatttttaattatttatgcaAGATATCTTTGGACTCTTGATCTGATGGCAATTGATCTGCTTGGTGCCATGGATGTCAGCTCAGAGCATGAAGCCATTGTGTCCTCCTCAATTGGACCCCAGGACACCACAATTCAATATATGCATGGCTTTGATAAATGAGAGCTTACAACTGCagctttcattacacaatgcttgatttaatttcagattaatttgaaGATGCTGGCAGTTCAAATTCAGAGAAATACAGTTAGATTGTTAATTCCATTCATTCTCAAAATTAAGGTTCTAAGTTTCCTTCACAATACCAGATCAGCAGCACACCTGGGCACCAAAAAGCATGTGTCAATGCATCCAGCTGTGGTGCTACATGAGAGGAATGGTAAGGGACAATGTCGCTGTAACATCTGTCTCCCTGAAATCTCTGAACTGCTGTTCTACAGTGGATGTCAGGgataaaacattaattgaagTTAATGTTTACCATATTAACTAGTTTATTCTATTCTCAGTTACTAAAAGGTAATGTATTATGCAACAGCGGATGTGCCATTAATGCACATACATTACATTCAtgtatcattttcattattgattCTTTTCAATATAAATTCAAGTCACAGTCCAAACAAACTAATTTTCgtctattttaaaaatgatcagtTTGTGCTTTTCTTGCTAATACTCCAGATACATGCAATCCTGGATGATCccagagtaaaataaataaataaataaataaaaataatttacagtgtatttattttatctgaatCTTATGAAAGTTTAGTGAAGTGTGGTGAAGGTCAGAAAAATCACTGTAAAGTGTCGAGAGGTTTGGCGGTAACCATAGCAAAGTGTAAGTATTTTCAAGCTTATGTAATTAAAAGGACTATGGCAGGTTCACaaacttaatttgtttcagcaagaataaaaacacttcaGTAAAGAAGCAATACACGTTATACATTACACTTTCACAAAGCCTTAGGTAATCCTAAGATATTTAAATGCTTATGACAAAGTAAGCCACAAAATGCTGATCACTTActggtatttaaatgtatacctGCTCTGTGGCAAGGTAACAATATAGGCAGTTCATATGCAACTCTCTGATTAGCTCTCATTGTTTCAGCTTGAGTCATAATTCAGAAGGAAGCCTTCAGACATTTTTGGTGTCAAACCTCATGAAGCACAGTGTACAGAATTCCTCTCATTAAAGACTGAATTAAGTATACAGAAGTATGCCACTCTAGCAGCCTTACTTGCAAAACTGCAACATTGTTTGAAGGATAGTGATGGAAAATAGTTATACTGGTACTAAATATACAGGGTCATCAGATTTCTAAGTTATTCAAGTTGGAAACCCCAAAGTTCTTTTACCCAGTTCATATCAGTGGCTAAAGACCTGGTACAATGTAAATTTGATTAAATGATTAAGAAAATgacatcaattaatcaatctgCAACTCAGGATTTGAATTTTCAGCATGCAGGTTTAAGCCCACGGAGGAACGAAGCCGTCCAAACTTCTTGTAGAAGTCTTCCTGCGCACGTACAAGAGCCTCTTCATCGATGTAGACCGCCGCCCTTTTGGCTAGGACGTAGTATTGCACTTCCCTTATACTCCACCCTGTGACATACATGAGGAATCCACACACAGCTGCCGTGGATCTGCCCACCCCAGCGTTGCAGTGCACGTAGACTGTGTGTCCGTTTTCCAGCAACCCATGCAGGAGGAACACAGCCTGGGGGAGCATGCGGATCCGGCCT

Function

symbol description
epm2a Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Lafora disease and progressive myoclonus epilepsy. Orthologous to human EPM2A (EPM2A glucan phosphatase, laforin).

NR:

description
laforin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5309 True 4875 lncRNA 0.34 1 24657907 24662781

Neighbor

gene id symbol gene type direction distance location
AMCG00003915 NA coding upstream 103791 24552140 ~ 24554116 (+)
AMCG00003912 utrn coding upstream 117534 24501990 ~ 24540373 (+)
AMCG00003914 NA coding upstream 159351 24465051 ~ 24498556 (+)
AMCG00003913 NA coding upstream 234066 24366199 ~ 24423841 (+)
AMCG00003911 NA coding upstream 338259 24310608 ~ 24319648 (+)
AMCG00003918 LOC107091581,LOC106928558 coding downstream 106176 24768957 ~ 24776655 (+)
AMCG00003922 LOC108428695,LOC107733655,LOC107710424,LOC107692633 coding downstream 120013 24782794 ~ 24825995 (+)
AMCG00003925 rab32,LOC107601480,LOC107696121 coding downstream 166648 24829429 ~ 24829785 (+)
AMCG00003926 rab32,LOC104954518,LOC106607994 coding downstream 189879 24852660 ~ 24868862 (+)
AMCG00003923 NA coding downstream 221415 24884196 ~ 24966367 (+)
G4354 NA non-coding upstream 10152 24647509 ~ 24647755 (+)
G4351 NA non-coding upstream 47345 24610274 ~ 24610562 (+)
G4165 NA non-coding upstream 876819 23780780 ~ 23781088 (+)
G4164 NA non-coding upstream 882964 23774640 ~ 23774943 (+)
G4163 tulp4,LOC102289060,LOC104963868,LOC107597860,LOC102779174 non-coding upstream 883855 23773740 ~ 23774052 (+)
G4359 epm2a non-coding downstream 1158 24663939 ~ 24664183 (+)
G4362 NA non-coding downstream 22235 24685016 ~ 24687137 (+)
G4452 NA non-coding downstream 818817 25481598 ~ 25554089 (+)
G4482 NA non-coding downstream 947297 25610078 ~ 25610296 (+)
G4512 fig4b,fig4 non-coding downstream 1151510 25814291 ~ 25888313 (+)
AMCG00003910 zbtb2b other upstream 528015 24118384 ~ 24129892 (+)
AMCG00003902 NA other upstream 615022 23838589 ~ 24042885 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other upstream 931763 23710029 ~ 23726144 (+)
AMCG00003891 NA other upstream 1124032 23521826 ~ 23533875 (+)
AMCG00003884 NA other upstream 1319666 23332601 ~ 23338241 (+)
G4360 NA other downstream 20619 24683400 ~ 24683920 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other downstream 1122392 25785173 ~ 25795795 (+)
AMCG00003948 sesn1,LOC102782344 other downstream 1418502 26081283 ~ 26085122 (+)
AMCG00003962 NA other downstream 1919886 26582667 ~ 26586892 (+)
G4831 NA other downstream 3399582 28062363 ~ 28103211 (+)

Expression


Co-expression Network