G4362


Basic Information

Item Value
gene id G4362
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24685016 ~ 24687137 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU5313
tcaaaGTCATAAATATATGCAATGGATGGTACAACTGAAAAACCATTTAAAGTGAAGGgattattgaaaaatacataacagtGAATTGAGTGTATGATTAacagtttaaacaaattacatggGGGTACAAATACCAGGTTTGTAGGACCACATGAGAAGCATGAATTATATATTGCATGTCTCCAACACACTACTCACTTTTTAATGAAGACCACACAGTGAAAGTAAACCTGAGTTATGATCAGATGGACTCTGAATTTCAGACTCTCACAGTTTCTCACACACCTGCATTGAACAATAGTATATCCTGTGAATTTTAAAAGGAAGACTATTCATTGTGATACAAATATTGagtgttaaatgtttgtgtatagAAAACTGAAATACCTCAACCTAGAAAATGTTAACATTCTGAGAATAGTATAGGTCAAATAGCCTTCTTTCAAATATCCAAATCATTTGTGCATAAGGTTATGTGAATTCCTATCCTTTTAATGCCATACAAAATGTTTACCAAACTAAATGTGTCAGAAAGTCACTCTTCCCCACCAATGTGGTTTTCATTGATTTTATGAAGTTCaaataatcatttgtttttcaccaaTAAATTACTAAAGGCTTTTCAAAGGAACCAAAACATTTGTCATCTAATCTCAAATTCTACAAAGCTGTTATTTCAATTATAGCTATATAAAAAaccaacatttttaaatatgcaaaataaatgtgtttgttgcatCCTAAAATGGATGCAATAATTAAAGTCAAAactttataaaattaatattttcaaagatcAATCTTAAATTTGCATTCAATTTTACACTCAAGACCACTAACAAGGTGGTATTAATCAACACACTCACAATTATATCTACCCAACCAAAACAATGACCTTTAGCAAGAGGAAGAagtaatattttgttaattaaaaacagaacttACATTGCCTTAGAGACACCTCAAATTATTATTGTCttgaatatatttgtatcaATTTAAATGCCGTGGTCTTTCAGATTGCACATCTTATCAAATGTCTACCGTGCATTCATCTAAAATGTGAAGTATTAGATGAGTGATTAAGGCAAGCCACACAAACTGATCTCAATACATCAACACATTACTTAGTTTCTACTTCAATAAATGCATTAAGACaggtatattttatgtaaactTTTAATCCCCTTAAGTTTAGGGCTAGTGTTCAtcatttaaaaccaaacacacacaataaaaactcAACTGTATAATACTGTATGGTATCATGTATAAGTTCCTGTCACCATATAGCAATTGTGGCATTGTATGTACAACAGTCTTTACCAATTGTTATACAAGTTATGAAAACGTTTAAAAGGGTGTTCTACAGAATCTTTTTCTGTTCAACCAtgatacatataaaacattttagagatctgttttaatgaaatactgcTTGGGTTtggatgacaaaaaataaataacacaaaaaacatgaacaacaacaaaagaaaaaggtgcAGAATTTGCATGCTGGACACAGAGAGAACAAGTTGACTTTATATAGACAAAAGCTAGACTAACAAATTCAATTCCAtcaatttgttttcctattCAAATTGTCATGAGTTTAAGGTTGAGGACAGTCAAGAAAGAGAACTGGCCTTTTGTCCAATGACACCTCAGTCTTTCTGGTGGGAGTGACTGGGCAGGAGGATAAGACAAAACCGAAAGGCAAGGACTTACTCTAGGATTGCACTTTCCTTTCATTAAACCACATCAAAACCACAAATATAGGCCCACCCCACTGAGGATCAATGCTAGTTTAAAATTTCCTTCACATCCACTCATAGCCATCAGAAAGGATGCGGTACCTGGGtacctgaaaacaaaaagcttcCCAGGTAGCCATACGAGTACCTGGgaagctttttgttttcaggaCCCTGTACCTGCTGGTTCCCCTATGTAATAAAGTAGGGCTTTGTTAAATTTGTTAAATAgtatttactgtactgtactttgtgTCCAGTGTGCAGATGTCTAGCATAAGAACTTAAATATGGTATTTGTAGTTATATTCAAtgttgtacacacacaaaaatacattaaggtAGTAAAACTGTTCATGGTACATTTt

Function

GO:

id name namespace
GO:0008190 eukaryotic initiation factor 4E binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5313 True 2122 lncRNA 0.38 1 24685016 24687137

Neighbor

gene id symbol gene type direction distance location
AMCG00003915 NA coding upstream 130900 24552140 ~ 24554116 (+)
AMCG00003912 utrn coding upstream 144643 24501990 ~ 24540373 (+)
AMCG00003914 NA coding upstream 186460 24465051 ~ 24498556 (+)
AMCG00003913 NA coding upstream 261175 24366199 ~ 24423841 (+)
AMCG00003911 NA coding upstream 365368 24310608 ~ 24319648 (+)
AMCG00003918 LOC107091581,LOC106928558 coding downstream 81820 24768957 ~ 24776655 (+)
AMCG00003922 LOC108428695,LOC107733655,LOC107710424,LOC107692633 coding downstream 95657 24782794 ~ 24825995 (+)
AMCG00003925 rab32,LOC107601480,LOC107696121 coding downstream 142292 24829429 ~ 24829785 (+)
AMCG00003926 rab32,LOC104954518,LOC106607994 coding downstream 165523 24852660 ~ 24868862 (+)
AMCG00003923 NA coding downstream 197059 24884196 ~ 24966367 (+)
G4359 epm2a non-coding upstream 20833 24663939 ~ 24664183 (+)
G4358 epm2a non-coding upstream 22235 24657907 ~ 24662781 (+)
G4354 NA non-coding upstream 37261 24647509 ~ 24647755 (+)
G4351 NA non-coding upstream 74454 24610274 ~ 24610562 (+)
G4165 NA non-coding upstream 903928 23780780 ~ 23781088 (+)
G4452 NA non-coding downstream 794461 25481598 ~ 25554089 (+)
G4482 NA non-coding downstream 922941 25610078 ~ 25610296 (+)
G4512 fig4b,fig4 non-coding downstream 1127154 25814291 ~ 25888313 (+)
G4526 NA non-coding downstream 1242330 25929467 ~ 25929680 (+)
G4536 NA non-coding downstream 1257006 25944143 ~ 25944352 (+)
G4360 NA other upstream 1096 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 555124 24118384 ~ 24129892 (+)
AMCG00003902 NA other upstream 642131 23838589 ~ 24042885 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other upstream 958872 23710029 ~ 23726144 (+)
AMCG00003891 NA other upstream 1151141 23521826 ~ 23533875 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other downstream 1098036 25785173 ~ 25795795 (+)
AMCG00003948 sesn1,LOC102782344 other downstream 1394146 26081283 ~ 26085122 (+)
AMCG00003962 NA other downstream 1895530 26582667 ~ 26586892 (+)
G4831 NA other downstream 3375226 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 3692674 28379811 ~ 28399741 (+)

Expression


Co-expression Network