G4512 (fig4b,fig4)


Basic Information

Item Value
gene id G4512
gene name fig4b,fig4
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25814291 ~ 25888313 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU5503
GGAGTTTCTGGTTTTGTACGTTTCTTAGAAGGGTATTATATTGTTCTGATCACAAAACGAAGAAAGATGGCCGACATCGGAGGACATTCCATATATAAAATAGAAGACACAAATATGATCTACATTCCAAACGACTCAGTCCGCGTAACCCATCCTGATGAAGCCAGATATGTGAGAATTTTCCAAAACGTTGATCTTTCCAGCAATTTTTACTTTAGGTAAGGTTTAAACCTGATTTTTGATgcttaaacaaacaaagatgttacaaaaatgtttgtgtgtgtatgtatgtatg

Function

symbol description
fig4b Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4J; Yunis-Varon syndrome; amyotrophic lateral sclerosis type 11; and bilateral parasagittal parieto-occipital polymicrogyria. Orthologous to human FIG4 (FIG4 phosphoinositide 5-phosphatase).
fig4 Predicted to enable phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity. Predicted to be involved in phosphatidylinositol biosynthetic process. Predicted to act upstream of or within several processes, including negative regulation of myelination; nervous system development; and phosphatidylinositol metabolic process. Located in endosome membrane and lipid droplet. Implicated in Charcot-Marie-Tooth disease type 4J; Yunis-Varon syndrome; amyotrophic lateral sclerosis type 11; and bilateral parasagittal parieto-occipital polymicrogyria.

NR:

description
polyphosphoinositide phosphatase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5503 True 295 lncRNA 0.35 3 25814291 25888313

Neighbor

gene id symbol gene type direction distance location
AMCG00003931 wasf1,LOC106571806,LOC107739187 coding upstream 46503 25763983 ~ 25767788 (+)
AMCG00003933 wasf1,LOC106607981 coding upstream 66850 25735715 ~ 25747441 (+)
AMCG00003934 NA coding upstream 168990 25632524 ~ 25645301 (+)
AMCG00003935 ust,LOC106607986 coding upstream 265669 25518913 ~ 25548622 (+)
AMCG00003932 NA coding upstream 354340 25425817 ~ 25459951 (+)
AMCG00003939 NA coding downstream 16072 25904385 ~ 25915025 (+)
AMCG00003938 NA coding downstream 27107 25915420 ~ 25927139 (+)
AMCG00003937 NA coding downstream 44714 25933027 ~ 25938329 (+)
AMCG00003943 NA coding downstream 51569 25939882 ~ 25943047 (+)
AMCG00003944 NA coding downstream 58330 25946643 ~ 25965249 (+)
G4482 NA non-coding upstream 203995 25610078 ~ 25610296 (+)
G4452 NA non-coding upstream 260202 25481598 ~ 25554089 (+)
G4362 NA non-coding upstream 1127154 24685016 ~ 24687137 (+)
G4359 epm2a non-coding upstream 1150108 24663939 ~ 24664183 (+)
G4358 epm2a non-coding upstream 1151510 24657907 ~ 24662781 (+)
G4526 NA non-coding downstream 41154 25929467 ~ 25929680 (+)
G4536 NA non-coding downstream 55830 25944143 ~ 25944352 (+)
G4589 NA non-coding downstream 337180 26225493 ~ 26227500 (+)
G4590 NA non-coding downstream 340615 26228928 ~ 26229252 (+)
G4592 NA non-coding downstream 355349 26243662 ~ 26244054 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 18496 25785173 ~ 25795795 (+)
G4360 NA other upstream 1130371 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 1684399 24118384 ~ 24129892 (+)
AMCG00003902 NA other upstream 1771406 23838589 ~ 24042885 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other upstream 2088147 23710029 ~ 23726144 (+)
AMCG00003948 sesn1,LOC102782344 other downstream 192970 26081283 ~ 26085122 (+)
AMCG00003962 NA other downstream 694354 26582667 ~ 26586892 (+)
G4831 NA other downstream 2174050 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 2491498 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 2566106 28454419 ~ 28465646 (+)

Expression


Co-expression Network