G4589


Basic Information

Item Value
gene id G4589
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26225493 ~ 26227500 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU5608
tgaaaaacaaatcatcaaGTTTACCTAGTAGCATTTTATACAACATGTATAAATAGATCATTATATTATTTCCATGTGTTCGGGTATAGGGTTTGAAGTGTTTTGAAAGACACTCAGAGGATGTCAAGTTTGACACTAGGGGAATGAGGATTGAAAGTATTTATTATGTGCAgtacatattttagtttgtagTACATAGTTTTCCCTGTATTTACCtgtatattgcatatatataaaacaggtTGGCCATATGATATGTATGGATTATACACCACTAGAGGGAGCCAATAGCCTACCAGAAAATAACAAACTTGCCAATGgaatgaattatatatattattttgttatttacagtACAATTGTTCCAGCCTATACACAACAGTTCTGTTAACTTCCATCTGCAGTGCAGCATTCCACCATCTACCAAAACCATATTgtctaaaattacatttaaaatattttaatattaaaacaactgAACAAGTTATGTTGACATAACAGCCTTTTGGCAGTAATCTTCAAAGTTAAGTCATTATATTCAAGTTTTACAATACACCTGCATTATAGCCACAGATGGGTGATAAATCACAAGTTTAATGAAAAGTGCCCTAGTTCATTTCACTTAGAAACAAGAACTGAAGAACAAAAGCACAATTAGCAAACGAGAAGAGGCCGATCCACCAATTTACTCATTTTGTTGCTAGTTATCATGTTaatcatgttaattaattaagtcaAAGTAGCTGCGTCTTCAAAGTACCCAGAGATTTGTGCACATAGCTAGGTAGTCTGTGTCTAAACCCCAACCACTTCCTGTAACAAAGGCGAGTTGTTATATAAGCTGTGGCATTGCTTTAACTCTGCTATATTAGAATGAGCATTATGGGACAGCTTGGCCCTATGTCTTCTGCAGGGATTGACGCAAGGCTCTCTCACAGAAGGCTGATATTTATTCCAGGGGTACAGAAATGTAGCCAGGAAAGGGGGAAATGCATTACTTTATGGTGCTCATTCAATGAAGCAGGTATTTAGGTTTGTTATATGGTAAGGCAGTAGATGGCAGCAGTTTCCTGTGATAAAAgtgcttaaacaaaataatccagtcaaaataagacattttatatTCCCTTAAAACAGCCGGTGCTTTAACCGTACTGCTGTTGCCTTCTTGTAGAactttatagttatttttctttaactaCTAATCATGAAAATCTTCTTATGCTATTAAATAGTAAATAATCTGGAGTATTTCAGAGaggtgttttatataaataagagaatttaaatgtataacatatttCAAATGGATATTTATGAATCCTTATAATCAGCAAAtgagacaaaattaaataaactcatCCTTCTTGTGtagaataacaataaataagtcAAATTTGTTAAGGACTGTGTTTCGGTTATAGTGCtccagaaatgtaaaacatagtAAGTGGCTCCTGTATGTAAGAAAGCCatacaaattgtgttttaaCCAATTCCCAACACAATCATACATGTTTAAGGCAATACTGTAATATGTTTCATGTTTAAACAACTGGAAACATAATTCCTataaaacatcattaaaaatacTACACCATTCCCTCATCTTCACTATGAACATCAAATACCAGATGTATAGATGCTGTGcctgtaataaaaacatttcattattgtttCCAGAATAAAAACTATTTCTGGAAAACACAATGTGATGTAGATGATTTAATGCTACAACTGCTAAGCTGCAATGGTTAGATCATTAACGTGtctataatgataataaatatattgcattgcTTCCATATAGGGCCTTATTGAGATTCTATTTCCCACTTCTTGTGAAGAGATGATCTTCTCCGAGTCTCCACACAGAGGCTAGCTTGTGCTTCGGTCCCCTTCTGTCCAGTATTGCTCAGTCTGCATCTCAGTGAGCCGGGACACTGTCCTCTGAAACGCAAAGATCTCCTCCTCTCCAGTGAAAATGGACAGCTCCTGTGCTGTATTc

Function

NR:

description
PREDICTED: homeobox protein otx5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5608 True 2008 lncRNA 0.27 1 26225493 26227500

Neighbor

gene id symbol gene type direction distance location
AMCG00003947 NA coding upstream 205668 26019544 ~ 26019825 (+)
AMCG00003944 NA coding upstream 260244 25946643 ~ 25965249 (+)
AMCG00003943 NA coding upstream 282446 25939882 ~ 25943047 (+)
AMCG00003937 NA coding upstream 287164 25933027 ~ 25938329 (+)
AMCG00003938 NA coding upstream 298354 25915420 ~ 25927139 (+)
AMCG00003954 NA coding downstream 29926 26257426 ~ 26257668 (+)
AMCG00003949 snx3 coding downstream 44919 26272419 ~ 26279485 (+)
AMCG00003956 NA coding downstream 92267 26319767 ~ 26328027 (+)
AMCG00003955 NA coding downstream 107133 26334633 ~ 26339261 (+)
AMCG00003958 sec63 coding downstream 112348 26339848 ~ 26365099 (+)
G4536 NA non-coding upstream 281141 25944143 ~ 25944352 (+)
G4526 NA non-coding upstream 295813 25929467 ~ 25929680 (+)
G4512 fig4b,fig4 non-coding upstream 337180 25814291 ~ 25888313 (+)
G4482 NA non-coding upstream 615197 25610078 ~ 25610296 (+)
G4452 NA non-coding upstream 671404 25481598 ~ 25554089 (+)
G4590 NA non-coding downstream 1428 26228928 ~ 26229252 (+)
G4592 NA non-coding downstream 16162 26243662 ~ 26244054 (+)
G4593 NA non-coding downstream 16747 26244247 ~ 26244637 (+)
G4594 NA non-coding downstream 28289 26255789 ~ 26256106 (+)
G4595 NA non-coding downstream 29281 26256781 ~ 26257025 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 140371 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 429698 25785173 ~ 25795795 (+)
G4360 NA other upstream 1541573 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 2095601 24118384 ~ 24129892 (+)
AMCG00003902 NA other upstream 2182608 23838589 ~ 24042885 (+)
AMCG00003962 NA other downstream 355167 26582667 ~ 26586892 (+)
G4831 NA other downstream 1834863 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 2152311 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 2226919 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 2340684 28568184 ~ 28585674 (+)

Expression


Co-expression Network