G4837


Basic Information

Item Value
gene id G4837
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28104210 ~ 28105707 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU5905
tcacttcacctgtcagtggtcataatgttatggctgatcggtgtataaatatatactagaTAACTGCACGGTTGTCCACATTAGGTCAAACCTCAATTCCtaaataatattagtagtaataataataaataatataaaatgtcactTATCCttaaaagaaatagaaatgaaagaataatggagaaaatgttaaatgaagCTCCACAGAGCACTTGCCCTAGTGATGTATCATTAGTTTTATTGTATATGCCTTAACGTAgccaaaatcaaatatttattatttttttaaaattaacttaattgtttagagaaatgtattctattttattcaaggaaaatgtatgttgttCTTATCAGATCATTTGTATTATGAGCAGTTTAATCTTGTCATATATTTGACTGGACTTGGTTTTCATCACAATGGTAGATGTATGAAAGGAACGCGTAAAGTCAATTCAAATGTGCATCTAATTTCATAATTCAACTAGAGAGCCTATGAAGAGAATAAGATGGTTTTTATAACAGAGCGATATTAACCTGGCTTGGTTTACCACAGTATACcattctctcagtctctctctctcctctaacaaacatgaaaataaatccctGTTTGCTTGCGAATGCTCTACCACTGTAGTGAGacgtgttgttttttcctgcttctaaagCATACCCTGCCTTACTGCCTAGTGATTGGCTGAGAGCATACAGCATTATTTGACAATTGTGGCTCACATCTTTGTGCACAAGCGCAGTGGATCACTCAAACTGGAGGTTCTGTGAAGAAAATCACCTGTGCACCGTTGCCAAATAGGACCTGATGTTTTAAACGTTTACTGGCTGATCAACAGTGTGACTGTGGTATTAAGACCAAGTCAAAATGCTGCGTGTGGTGAAATAGAGTATTTATACTGGAGCCCAAAGCAAAGACCGTACCCCtttgtttactgtgatttatGGCAAAAGTGACTGACCTGTCTGCATTTTAACATAAACTcagtaatcatgttttgtgtaacaatattttgtttcaattatgtaattttgattttgtgttcaGAATAAAAATGACAGATAACAGTTCATCCTGTTTGTCTTCAAGTTGGAACAAAGCactgattgcttttttttttgcatatcacattttataacctaattttaaatgtattgcctttttgtttctgtgaatcATGAATTTCATGAGGTCTTAAAAGTTTTACTTGATTGAAATAAACCTATTATATtggaattttaaaaagtgttctttactttcttctttttcatcaCCACACTCTGATCACTTATTTTCATAGCCTGTAATCCACTGGGGTccatataatattgcattttaaaggcCTTTCTCTTGCACAAGAATGCCTTCCACGAGCAATAATTAAGCaataactaaatatgtatttttctttctctttataacACTGAGCAAGTTTTAATTCATGaacatattaaacatgtattacaaTATACTATGGCATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5905 True 1498 lncRNA 0.42 1 28104210 28105707

Neighbor

gene id symbol gene type direction distance location
AMCG00003982 NA coding upstream 5884 28098060 ~ 28098326 (+)
AMCG00003980 NA coding upstream 9608 28062555 ~ 28094602 (+)
AMCG00003973 grik2,LOC103365520,LOC107103501,LOC105917636 coding upstream 598061 27492506 ~ 27506149 (+)
AMCG00003972 grik2,LOC107667969 coding upstream 654316 27430090 ~ 27449894 (+)
AMCG00003977 grik2,LOC101466412,LOC102291713,LOC102207761,LOC107740554 coding upstream 722208 27380559 ~ 27382002 (+)
AMCG00003983 NA coding downstream 153989 28259696 ~ 28275388 (+)
AMCG00003985 NA coding downstream 248808 28354515 ~ 28369974 (+)
AMCG00003989 NA coding downstream 267439 28373146 ~ 28379173 (+)
AMCG00003992 rnf146,LOC107735261 coding downstream 482124 28587831 ~ 28591593 (+)
AMCG00003994 NA coding downstream 584181 28689888 ~ 28698767 (+)
G4808 NA non-coding upstream 326551 27777290 ~ 27777659 (+)
G4806 NA non-coding upstream 327768 27721460 ~ 27776442 (+)
G4804 NA non-coding upstream 520176 27583571 ~ 27584034 (+)
G4787 NA non-coding upstream 821969 27282004 ~ 27282241 (+)
G4694 NA non-coding upstream 1452643 26651285 ~ 26651567 (+)
G4917 NA non-coding downstream 361210 28466917 ~ 28468944 (+)
G4981 NA non-coding downstream 786977 28892684 ~ 28893031 (+)
G5005 NA non-coding downstream 846846 28952553 ~ 28953065 (+)
G5085 NA non-coding downstream 1248814 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 1578520 29684227 ~ 29685543 (+)
G4831 NA other upstream 999 28062363 ~ 28103211 (+)
AMCG00003962 NA other upstream 1517318 26582667 ~ 26586892 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 2019088 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 2308415 25785173 ~ 25795795 (+)
G4360 NA other upstream 3420290 24683400 ~ 24683920 (+)
AMCG00003988 NA other downstream 274104 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 348712 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 462477 28568184 ~ 28585674 (+)
AMCG00003993 NA other downstream 534467 28640174 ~ 28683981 (+)
AMCG00004011 ccnc other downstream 1421707 29527414 ~ 29541358 (+)

Expression


Co-expression Network