G4917


Basic Information

Item Value
gene id G4917
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28466917 ~ 28468944 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6007
attgttctatataaaatccctgggataaggcaccccgcatttaagatttattaagaCTATTGTAgtgccagctatttttaaacttacatgtacaaataatttaaatgtcaatgcttattcttacattttttaaattacttttttttctctctctctccttaaaAGTTTCCAGTCCTTTTGTGATCCTCTTGATATAAGAAGTCTACCATTTATTATCGGCCGGCAAAGTCATGTGATGTCTGTTGCCATTGGCATGTTTGGAATAATTTATGTGGACATAAAAGGGATTGTCTGATTTACCATGAACCACTTAGGATTTGTAGAATTTGAGGAAGGAAAggaaatattcaattttttgcCTTAAGGGTTTGTGCTAACTATGAAGTCACGTTCTGGATTTATGCCTGGgtttttgccatttttaaaaataaatattttaattatttgtgcctgctaaaaaataaaggtaatttaTTTGGTGAGACCTGGACTTTaccacattcaaatatattaatctcTTATTTAAACCAGTAGGTGGAGATAGTGTAGAAGCTGGCAACCTAAAGAAAACTTAAAACCAGCtcacagaaatgtgaaaacCCTGAAGAAACGTCTTGTAGGTGTAtatgtttgtctgtgtatttacatgtatatatttatgtatcttttcCTTGATATATATTAAGCAGGTTGTAGCAatttagatatattttgcaTAGGTTAGGCATAATggaacagaaattaaattgtcAATTTATTTCAACTGGGAATTTAAGGCCATATCTGAGTTTAGTAATAGATGGCTTTTGGTAAATGTCAGTTTTGCTGAATATTGtaagacagaaaaacaagttttaaatcAGATAATTTTCCTTCTACATATCAGATAAGTTgatattaattttacttttcagCTGAAGTGCCAATGTAAGAATGCATAAAATAAGTGCTGCTTATTCAGCTTTTACTAGTGAATTGGTTTTACTTTATGATTATGTTATGATTATACACTTTCAACTGCTAAACCTTTCTTCAGTcaggtatatattttatacttctGTGTATAGGCTGTTATCCCATTTCCATGCCCTGCCTGTTTTGTGATTTCAAGTTCTGTACATTAGCTACCAAGATGATAAGCAGGGTTCTCcatatttttcttaatcttttttAGGATAATTAAATTGGTGTATTGAAATGTTCACCCTACTCTGTACAAATCTCCTTTTGAAATACACTTGAAATTGCAGtgtgatttttacttttttactttttacttttactttttgtacCTGGTAAATGTAATACTTATTTCTGTGAccataaaatcaaaaacatttattttagaacagCACTAGATTCACATAAAGGCCATTAGTTGAAACTTTTGAGTTGAAATACACTACAGTGAAGGGGAAGAAAGGttcaaattagctttttttttatttaatgtggtgTTCTCTTTTTATGATGCAAGATTTTTCTCTTCTGAGTGCTTGTTGCTAATATAACTGACTATAAAAGTTGAGTGGAAACTTTTCTGTTTCTCAGCTGTCCTGCAGTTcagtgatttcttttttcttttttcaatttggCAAAATGAACACTGTTAGGTGAAGAGGAGAGTAGGTATGACACAATAATTCAGTTTgatctttttaatttcttcagaaTACACTTTTTCcatcatataaaaatgtgtttattagtGTGCCAGGTTTTTGCATAAAGGCTTGTATGAAAAAGTGATTTCTTAGCAACGATGGTATTCATCAATAATTGTTAACAGTAAGGTTCTTTAGAAAGATTCTTTTGAATTTAGTTGAGAGGCAATGAGCTCACATTgaatcaataatttaattgatttataatgaCGTTTGACCAACTGCATTAGAAACCATTTCACCAATAAACAAAGCAAGTACTTGTAAAAAGTCAGATCTTGTAACAAATGTTTTGGAAATTGAGGGGAAagtggaaaatgtttgttttattcactCACTGGAAGGTCATAATAGTACATGAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6007 True 2028 lncRNA 0.43 1 28466917 28468944

Neighbor

gene id symbol gene type direction distance location
AMCG00003989 NA coding upstream 87744 28373146 ~ 28379173 (+)
AMCG00003985 NA coding upstream 96943 28354515 ~ 28369974 (+)
AMCG00003983 NA coding upstream 191529 28259696 ~ 28275388 (+)
AMCG00003982 NA coding upstream 368591 28098060 ~ 28098326 (+)
AMCG00003980 NA coding upstream 372315 28062555 ~ 28094602 (+)
AMCG00003992 rnf146,LOC107735261 coding downstream 118887 28587831 ~ 28591593 (+)
AMCG00003994 NA coding downstream 220944 28689888 ~ 28698767 (+)
AMCG00003998 LOC105908890,LOC105419921 coding downstream 248838 28717782 ~ 28731033 (+)
AMCG00003999 NA coding downstream 262965 28731909 ~ 28751998 (+)
AMCG00004003 NA coding downstream 613149 29082093 ~ 29108404 (+)
G4837 NA non-coding upstream 361210 28104210 ~ 28105707 (+)
G4808 NA non-coding upstream 689258 27777290 ~ 27777659 (+)
G4806 NA non-coding upstream 690475 27721460 ~ 27776442 (+)
G4804 NA non-coding upstream 882883 27583571 ~ 27584034 (+)
G4787 NA non-coding upstream 1184676 27282004 ~ 27282241 (+)
G4981 NA non-coding downstream 423740 28892684 ~ 28893031 (+)
G5005 NA non-coding downstream 483609 28952553 ~ 28953065 (+)
G5085 NA non-coding downstream 885577 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 1215283 29684227 ~ 29685543 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding downstream 1228723 29697667 ~ 29699224 (+)
AMCG00003990 NA other upstream 1271 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 67176 28379811 ~ 28399741 (+)
G4831 NA other upstream 363706 28062363 ~ 28103211 (+)
AMCG00003962 NA other upstream 1880025 26582667 ~ 26586892 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 2381795 26081283 ~ 26085122 (+)
AMCG00003991 NA other downstream 99240 28568184 ~ 28585674 (+)
AMCG00003993 NA other downstream 171230 28640174 ~ 28683981 (+)
AMCG00004011 ccnc other downstream 1058470 29527414 ~ 29541358 (+)
G5245 NA other downstream 1802266 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 1827923 30296867 ~ 30307175 (+)

Expression


Co-expression Network