G5129


Basic Information

Item Value
gene id G5129
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29684227 ~ 29685543 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6278
GGAGAAGAGAAAAGACAGTTGTAATTAATTAGCTCAACATTTCTGCGAATTCTTTGACACAAAGCAAGTGTCTGTGAGGGGATTAAGGTGAGTCGGTTTACTCCACATTTTTCGCTCACGTACATGTcctttacatgtatataaagGCTCGCTTTGATCAATGGTTCCACTTATAAACAACGAATACAAGTTGTTGAGGGATTTCGATTTCTCCTCTCTTGAGCTCTGAGGATTCCCTTCCGGTGGCTTGTGCCTGTAGACTTGGATTCCTAGCCATGCTCTCCAGATAAGCTGCTCAGCATTTATCTTTACACTGCTGTTCCCTAACCATGACCAATGACCACTTCCTGACACCAAAGAGGTTTGACCTAGTTCGATCCCCCCTCACAGATCAGGAAATGAAGATGTTAGAAATAAGACCTAACAGAAACAGCcaggaatttgtatttttctactcCCAGATGCATCTGTACATGTTTTGGTCAGTTACACTCAATATTTGCCTACTTTTCTTAACTGTTACTGACCCTCAAATCCTGTGTCTAGTACTAGTtctgttttaattcaattactTCTCGTGTGGGTAGCaatcagccacatcactgggccATGTAGTCTGCACTCTGATTAGGTGAGGGTGAGATGCTGTCAAGGGATCTCCACGGCAACAGTAACTTAGAGGACATTAGCATAATTGCATCACTGGAGAGGATGGGGGTGGTGGTGTTGCAGTGCACCTGAAAGAGCCCTGACTATGTTCCTAAAAAAAATGGCTACAGGATTTAATTGCATAGCAGCCGTAGGATTTTGCATTTATCCTTTTAATATGGTAAGATATTAACTTAGACAGTGTGATATGGCCCATCTCCAGCCCTTTTCATCACATCGTTAAGCTTTTGGGTTTACAATTAAATCAGGGAAACAAGTATTCTTTAACTTTTTCTTAtagcagaaataataattaaaaaatgttcgATAATCATCAAAAATGTTTGGTAAAAATTGCAGCAGATGATATCAGGAAATATTTACAGTAACTATCATTCCTTATTTATGAGAGAATTTTTGAACTGGAAACGTGTAAAACATGAATGAGTAATAAAACCTTGTTTTATCATAAATCTCTGCAACTGCACAGTGACTTAAGTGTACAATTAGCAAGAACAATTATACACTGTAAAGAGACATGATACAAATGGCTGATCAAAGTTCAGATGAACTTATAATTAACAATAGCTCATTTACAACTGAATGAACATGAAAGTTTGTGTACTTAAGTGTACCATGTGTAATTAACTTGGCTACATTTGAATGAGa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6278 True 1317 lncRNA 0.34 1 29684227 29685543

Neighbor

gene id symbol gene type direction distance location
AMCG00004013 NA coding upstream 2633 29663803 ~ 29681594 (+)
AMCG00004012 NA coding upstream 57709 29613189 ~ 29626518 (+)
AMCG00004015 NA coding upstream 72697 29600561 ~ 29611530 (+)
AMCG00004017 NA coding upstream 86000 29591603 ~ 29598227 (+)
AMCG00004014 NA coding upstream 97076 29581102 ~ 29587151 (+)
AMCG00004023 NA coding downstream 298070 29983613 ~ 29998684 (+)
AMCG00004027 NA coding downstream 408759 30094302 ~ 30097720 (+)
AMCG00004024 rwdd1,LOC107587776,LOC107704860,LOC106579327 coding downstream 425543 30111086 ~ 30114969 (+)
AMCG00004026 NA coding downstream 445693 30131236 ~ 30137944 (+)
AMCG00004025 NA coding downstream 471819 30157362 ~ 30167872 (+)
G5085 NA non-coding upstream 322548 29354521 ~ 29361679 (+)
G5005 NA non-coding upstream 731162 28952553 ~ 28953065 (+)
G4981 NA non-coding upstream 791196 28892684 ~ 28893031 (+)
G4917 NA non-coding upstream 1215283 28466917 ~ 28468944 (+)
G4837 NA non-coding upstream 1578520 28104210 ~ 28105707 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding downstream 12124 29697667 ~ 29699224 (+)
G5185 NA non-coding downstream 423298 30108841 ~ 30109040 (+)
G5191 NA non-coding downstream 436552 30122095 ~ 30123181 (+)
G5198 NA non-coding downstream 460312 30145855 ~ 30146557 (+)
G5248 NA non-coding downstream 589565 30275108 ~ 30276282 (+)
AMCG00004011 ccnc other upstream 142869 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 1000246 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1098553 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1218581 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 1284486 28379811 ~ 28399741 (+)
G5245 NA other downstream 585667 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 611324 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 1202452 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2714862 32400405 ~ 32402383 (+)
G5642 NA other downstream 3444577 33130120 ~ 33131186 (+)

Expression


Co-expression Network