G5141 (pou3f2,LOC106584047,LOC106605033)


Basic Information

Item Value
gene id G5141
gene name pou3f2,LOC106584047,LOC106605033
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29697667 ~ 29699224 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6294
atatcataaaAGCAATTGATGTAAACGTCAGGTGCCTTGTAGCTCTAGTCTACATCGTACTTTTCCTACACCAAGCATTCTTTCCACAATGGGGCTACACATCAAAACAGCGTCGTGTCACAGTGCTGGGCATATCTTTACAGGACATATTTTCCTCTTGTCgcttttggaaaaaaaagctttaatctCAGTGCCTGGTATtatgtatcttatttttttaatactcacTGCATTGCCTGGGTGCTCCCCTTGTACAGGTCAAAAACATATCATAACACCCGCTACCGCTTAGGATAGTCCAGTGTTTATTAtaggagaaataaaaagagacacaataataaaaaaaaaaagtttaagagGGGTCTATGTCTGTTCATTGTACAGGAGTCTGAACCCCATGGTGTGGCGGAGTGTCCCCATACACATCCTCCGGTCCTGGGAGGGCTCCTCCGGGAGGGGTcatccttttctctttctgtcttctGTTACAAAACCAAACCCTGACCACCTCCTTCTCCAGTTGAAGACTGTCCGCTAGCGAAGTGATTTCTGGGGCTGAAGGTTTGGGGCACTTTAAGAAATGGCTCTCCAAAGCCCCCTTGACGCTTACCTCGATGGAGGTCCgcttttttctcttcctcccctGCGCTGCTATCTTGTCCAGGCTGGTGGGACTCCCAGAAGTTGAATCTGCCTCCTCCAACCACTTGTTCAACAAAGGCTTGAGCTTGCACATGTTCTTAAAACTGAGCTGCAGGGCCTCGAACCTGCAGATGGTGGTCTGGGAAAATACATTACCATAAAGTGTACCCAAGGCGAGTCCAACGTCTGCCTGGGTGAACCCCAGCTTGATTCTCCTCTGCTTAAATTGCTTGGCGAACTGTTCCAGGTCGTCCGAGGTCGGGGTGTCCTCGTCCGAGTGGTCGTGGTGGCCCTGATGCTGCTGGTGCTGATGCTGTGGCGGCTGCTGATGCCCATGGTCGCTGAGGTGTGGACTGTGGTGGTCTTCGTGGGTATCTCTCAGGCTGTGATGGTGCATCCCTTGACCGCTCCCCGGGATCATGCCATTTACACTGAACCCAGGCTGTGAGTATATAAGACTCTGTCCGTTAGTTGATGCCATGCTCGGGATGTGCGCTGCTGTGGTAGTCCTCCATGCCCTTGCGTCGTGATGGTTCCCATGCGGCTGGTGCACCAGATGAGGCGGTCGCGGCTGATGTTGCAAACTGCTTGAATTGTGCAGCTCGTCCCTGCCGCTCTGCACAGCGGGCTTTATGTCCTGCTGGCTCAAGGGGCTGGTGGACCAGGGAGCCCCGTCTCCGTGTGACAGTGCCGTTATCCACTGGTGTGCGTGGCTGAGAGGATGACCATTGCTCTGCAGGGTATAGTCGCTCTGCAACAGTGTCTGTGCATCTCGGTACGCCGTCCCTTGCTGCATGCTCCCGGGCTCCGAGTGCACGATGGAGGAGCTGGAGGTGAGGATATTGTAATGATTAGACGCTGTGGTCGCCATGACTCTCGGAGCCGGACTGATCGCTCTTGTTAAAGGAGCCGTGCA

Function

symbol description
pou3f2 Enables identical protein binding activity and sequence-specific double-stranded DNA binding activity. Acts upstream of or within positive regulation of cell population proliferation. Located in nucleoplasm.

NR:

description
PREDICTED: POU domain, class 3, transcription factor 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6294 True 1558 lncRNA 0.49 1 29697667 29699224

Neighbor

gene id symbol gene type direction distance location
AMCG00004013 NA coding upstream 16073 29663803 ~ 29681594 (+)
AMCG00004012 NA coding upstream 71149 29613189 ~ 29626518 (+)
AMCG00004015 NA coding upstream 86137 29600561 ~ 29611530 (+)
AMCG00004017 NA coding upstream 99440 29591603 ~ 29598227 (+)
AMCG00004014 NA coding upstream 110516 29581102 ~ 29587151 (+)
AMCG00004023 NA coding downstream 284389 29983613 ~ 29998684 (+)
AMCG00004027 NA coding downstream 395078 30094302 ~ 30097720 (+)
AMCG00004024 rwdd1,LOC107587776,LOC107704860,LOC106579327 coding downstream 411862 30111086 ~ 30114969 (+)
AMCG00004026 NA coding downstream 432012 30131236 ~ 30137944 (+)
AMCG00004025 NA coding downstream 458138 30157362 ~ 30167872 (+)
G5129 NA non-coding upstream 12124 29684227 ~ 29685543 (+)
G5085 NA non-coding upstream 335988 29354521 ~ 29361679 (+)
G5005 NA non-coding upstream 744602 28952553 ~ 28953065 (+)
G4981 NA non-coding upstream 804636 28892684 ~ 28893031 (+)
G4917 NA non-coding upstream 1228723 28466917 ~ 28468944 (+)
G5185 NA non-coding downstream 409617 30108841 ~ 30109040 (+)
G5191 NA non-coding downstream 422871 30122095 ~ 30123181 (+)
G5198 NA non-coding downstream 446631 30145855 ~ 30146557 (+)
G5248 NA non-coding downstream 575884 30275108 ~ 30276282 (+)
G5271 NA non-coding downstream 846063 30545287 ~ 30545525 (+)
AMCG00004011 ccnc other upstream 156309 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 1013686 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1111993 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1232021 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 1297926 28379811 ~ 28399741 (+)
G5245 NA other downstream 571986 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 597643 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 1188771 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2701181 32400405 ~ 32402383 (+)
G5642 NA other downstream 3430896 33130120 ~ 33131186 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010054 pou3f2b coding NC_007127.7 CM002900.2 32559821 ~ 32563092 (+)
grasscarp (Ctenopharyngodon idella) CI01000027_09661837_09663114 POU3F2B, POU3F2 coding CI01000027 null 9661523 ~ 9663857 (+)