G5417


Basic Information

Item Value
gene id G5417
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30992606 ~ 30992900 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6638
cagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacattagcagcagatcctttaagtcctgtaagttgcgaggtggggcctccatggatcggacttgtttgtccagcacatcccacagatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttgaactcatgattcatcagaccaggccaccttcttccattgctccgtggtccagttctgatgctcacgtgcccattgtaggcgcttttggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6638 True 295 lncRNA 0.54 1 30992606 30992900

Neighbor

gene id symbol gene type direction distance location
AMCG00004065 NA coding upstream 2506 30974976 ~ 30990100 (+)
AMCG00004057 NA coding upstream 23402 30961633 ~ 30969204 (+)
AMCG00004064 NA coding upstream 45129 30945472 ~ 30947477 (+)
AMCG00004058 NA coding upstream 64115 30924788 ~ 30928491 (+)
AMCG00004059 NA coding upstream 79455 30897076 ~ 30913151 (+)
AMCG00004067 NA coding downstream 37518 31030418 ~ 31039737 (+)
AMCG00004066 NA coding downstream 54245 31047145 ~ 31062709 (+)
AMCG00004071 LOC105894840,LOC108443926 coding downstream 377482 31370382 ~ 31371158 (+)
AMCG00004078 NA coding downstream 1312591 32305491 ~ 32329172 (+)
AMCG00004075 NA coding downstream 1342492 32335392 ~ 32346595 (+)
G5297 NA non-coding upstream 214336 30778047 ~ 30778270 (+)
G5291 NA non-coding upstream 251733 30740564 ~ 30740873 (+)
G5272 NA non-coding upstream 439392 30552977 ~ 30553214 (+)
G5271 NA non-coding upstream 447081 30545287 ~ 30545525 (+)
G5248 NA non-coding upstream 716324 30275108 ~ 30276282 (+)
G5482 NA non-coding downstream 793434 31786334 ~ 31786883 (+)
G5490 NA non-coding downstream 1036104 32029004 ~ 32029301 (+)
G5493 NA non-coding downstream 1198420 32191320 ~ 32191542 (+)
G5499 NA non-coding downstream 1275848 32268748 ~ 32269071 (+)
G5501 NA non-coding downstream 1316605 32309505 ~ 32309912 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 97779 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 685431 30296867 ~ 30307175 (+)
G5245 NA other upstream 721082 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 1451248 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 2308625 28640174 ~ 28683981 (+)
AMCG00004079 NA other downstream 1407505 32400405 ~ 32402383 (+)
G5642 NA other downstream 2137220 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 3859963 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 4759550 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 5034379 36027279 ~ 36045282 (+)

Expression


Co-expression Network