G6224


Basic Information

Item Value
gene id G6224
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36495840 ~ 36520594 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7620
GACTTTTGAATCGTTGACTTTCTCCACTATGAATTTGCACCAGGGGTCTTTGGTGCTCTTGGCAGCCTCTATGTTATAAATAGAGCTTCGCTCAATACAGCTGAGGAACTGGCCGTTGTCAGCCTGTAGAGCCACACCCTCTGCAGCACCAATAAAGGATGCCAGTGGACCAAAACCAGCAACCACCGccttttcagtgttttttttcaaatcccTTCTTGCTTAGACCTGCctaaaacacaagaaaaggtNTAAGAACAGGTTTACATTTAGAATAACTAGTTCACAagttcaaagcaaaacaacccCGTGTATGGAGTGGGTTATGATATCATATAGAACTACATATTGTACCAAGGAATGgggattaaaatatattgtgctGATAATTGCAATTTCCATGAGTTATGAATGTAATCAATCTGAGGCAGCAAAATGGCTGTAATGTTGATATTATTGTTGTCTTTTGGTATTCTGGGATACTTGTCATGTAAGCTTTGCTTAAATTTAATAACTATATACTGAGATTaatgggatcaaatactttctagCTTTAATTTCTATAAATGAAACTCAAACTGTATCATTGTCTTTTTTCTCCATCTGTGTGGACaagtttatttgaattattcttCCAAATAAAGACAATTCTTTAAACACACCTTATTGTTTCTCACCATTCTTCAACATCATACTCATAATCATAATTCTCCAGAAAATGCCAAGCACAAAGGTCACTGCATAGAGTTTCTGAACATTGTCAACCTCTTATGCAGAGTAATTATTGTCTGCCCCAGGTGGGCAGTATCACGTGATTGCACCCCGCTCACTCAACCAACCACCGcattcacttttattattattattttttattatcaagTTATTTGCAAGTACCAGAATAACCCAGATATGAGATGtatgcaaattaataataaacttac

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU7620 True 941 lncRNA 0.36 3 36495840 36520594

Neighbor

gene id symbol gene type direction distance location
AMCG00004173 msra,LOC106571446 coding upstream 26816 36454991 ~ 36469024 (+)
AMCG00004170 ift172,LOC105901225,LOC107716708 coding upstream 105328 36348573 ~ 36390512 (+)
AMCG00004166 NA coding upstream 242942 36237806 ~ 36252898 (+)
AMCG00004164 si:ch211-243j20.2,LOC108429346,LOC107676254,LOC108279217,LOC107602209,LOC103363074 coding upstream 283892 36187493 ~ 36211948 (+)
AMCG00004165 NA coding upstream 337291 36134006 ~ 36158549 (+)
AMCG00004176 slc25a27,LOC107553473 coding downstream 143208 36663802 ~ 36669648 (+)
AMCG00004180 NA coding downstream 222033 36742627 ~ 36746065 (+)
AMCG00004186 slc5a6,LOC107601523,LOC107690043,LOC103362495 coding downstream 228262 36748856 ~ 36765206 (+)
AMCG00004187 enah,LOC107553420,LOC102788251 coding downstream 269840 36790434 ~ 36873869 (+)
AMCG00004192 NA coding downstream 363764 36884358 ~ 36904094 (+)
G6102 NA non-coding upstream 329970 36161606 ~ 36165870 (+)
G6067 NA non-coding upstream 675357 35820255 ~ 35820483 (+)
G6007 NA non-coding upstream 1029185 35465862 ~ 35466655 (+)
G6002 NA non-coding upstream 1039953 35455676 ~ 35455887 (+)
G5875 NA non-coding upstream 1145813 34899636 ~ 35350027 (+)
G6225 NA non-coding downstream 6074 36526668 ~ 36539067 (+)
G6240 NA non-coding downstream 33310 36553904 ~ 36555108 (+)
G6242 NA non-coding downstream 35512 36556106 ~ 36557331 (+)
G6247 NA non-coding downstream 44976 36565570 ~ 36593153 (+)
G6252 NA non-coding downstream 119066 36639660 ~ 36643702 (+)
AMCG00004167 NA other upstream 217606 36261788 ~ 36278234 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other upstream 450558 36027279 ~ 36045282 (+)
AMCG00004158 NA other upstream 729660 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 1625520 34852863 ~ 34870320 (+)
G5642 NA other upstream 3364654 33130120 ~ 33131186 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 167036 36687630 ~ 36697885 (+)
G6314 NA other downstream 253407 36774001 ~ 36774523 (+)
G6328 NA other downstream 340953 36861547 ~ 36891746 (+)
G6369 NA other downstream 478763 36999357 ~ 37000158 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 1312029 37832623 ~ 37847720 (+)

Expression


Co-expression Network