G6242


Basic Information

Item Value
gene id G6242
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36556106 ~ 36557331 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7640
CAGGGCACAGATAACTTCCAGCAAATAACTGCAGTTAATGGAATAAACTGATATGTTTTatagtaatagtattattattagtttgtttgtttgtttgtttttaaaaggaggTTGTATAGGTTCATGGTGTTTAACATCATAATCTTCATCATGAGCAGGTCTGACATCCAGGGCTGAGGATATAAACTGCTAATTTCTCAATTTATCAGGGATTAACACACACGTGTGCTTGTGGCTTTATTCGAACCATGATTCTCTGAGTGActgcatgtaaaaaataaaggaatatgaTACAAGAATTATTTGCTGCTGATTACAGAAGAACTTTAGCTCGTACAATGACACAGCACCTGACAAATGCAGAGCATGATCCAGACAGCCATGATAAACAGAACATATTGGTAAAGCATAGATATTGTTACTAGTTTTACCAAAATCAATATCAAGCTTCTGGCAAAATGTAAGGCGTGGacccacacaaaaacaaatggtgtGAAATGAGTTTATCACTGCTTTACTCTGTGGAGGACTGTCTCTCCTCAGCCATGCCCAGAGAGCTGCCAATAAGCCCTTTGAGTGACAGCAGGTCTTGTACACTGATGCCTGAGAAACATGGAAGCGTATAGCGTACTGGAAAAAAGACTTATGAGATAACACTGCATATTTTGCAATAAGTATTGTTCTATATCATGgcatgttttacagtttatgAATGAAGACTCTTGGGCTGTGGTCTTCATTTACTAGtctttcaaattaatgtttgaCTAAACAACAGTGTACAACATGctattttttcaaaaacaatgtcCAGCCTTGAATGCAAGTGATATCCCACTGTCTATCAAATATCAAACTATCCTCAAGTATAATGGATAGAAAGCATAAACATCAACACCCATAAAGACtactataatacattattattattattattattattattattactattatcattcTTCTCCTTCTTATTATCGTCACTGCCACTATTGCCATTGCCATAGCTCAGTGGAATAATTGTATGTACTGAAACAGCAAAAACTACCGATGTGCACAACACTATGTCATTTCattattgaaatatttctgGAGCACGGCGTTTTGCACTTTTCATAGATTAAATCCTCGGGATAGTCGGTGTGCTCCATTCTGTAAAACAGTCTGCACCAGGAATATAGGTGGCCTGACCTCTACTGGCTATGAGTATATAACATAATAGTNNN

Function

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7640 True 1226 lncRNA 0.36 1 36556106 36557331

Neighbor

gene id symbol gene type direction distance location
AMCG00004174 NA coding upstream 53990 36501826 ~ 36502116 (+)
AMCG00004173 msra,LOC106571446 coding upstream 87082 36454991 ~ 36469024 (+)
AMCG00004170 ift172,LOC105901225,LOC107716708 coding upstream 165594 36348573 ~ 36390512 (+)
AMCG00004166 NA coding upstream 303208 36237806 ~ 36252898 (+)
AMCG00004164 si:ch211-243j20.2,LOC108429346,LOC107676254,LOC108279217,LOC107602209,LOC103363074 coding upstream 344158 36187493 ~ 36211948 (+)
AMCG00004176 slc25a27,LOC107553473 coding downstream 106471 36663802 ~ 36669648 (+)
AMCG00004180 NA coding downstream 185296 36742627 ~ 36746065 (+)
AMCG00004186 slc5a6,LOC107601523,LOC107690043,LOC103362495 coding downstream 191525 36748856 ~ 36765206 (+)
AMCG00004187 enah,LOC107553420,LOC102788251 coding downstream 233103 36790434 ~ 36873869 (+)
AMCG00004192 NA coding downstream 327027 36884358 ~ 36904094 (+)
G6240 NA non-coding upstream 998 36553904 ~ 36555108 (+)
G6225 NA non-coding upstream 17039 36526668 ~ 36539067 (+)
G6224 NA non-coding upstream 35512 36495840 ~ 36520594 (+)
G6102 NA non-coding upstream 390236 36161606 ~ 36165870 (+)
G6067 NA non-coding upstream 735623 35820255 ~ 35820483 (+)
G6247 NA non-coding downstream 8239 36565570 ~ 36593153 (+)
G6252 NA non-coding downstream 82329 36639660 ~ 36643702 (+)
G6271 NA non-coding downstream 140765 36698096 ~ 36698298 (+)
G6272 NA non-coding downstream 141584 36698915 ~ 36700145 (+)
G6273 NA non-coding downstream 143756 36701087 ~ 36701451 (+)
AMCG00004167 NA other upstream 277872 36261788 ~ 36278234 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other upstream 510824 36027279 ~ 36045282 (+)
AMCG00004158 NA other upstream 789926 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 1685786 34852863 ~ 34870320 (+)
G5642 NA other upstream 3424920 33130120 ~ 33131186 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 130299 36687630 ~ 36697885 (+)
G6314 NA other downstream 216670 36774001 ~ 36774523 (+)
G6328 NA other downstream 304216 36861547 ~ 36891746 (+)
G6369 NA other downstream 442026 36999357 ~ 37000158 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 1275292 37832623 ~ 37847720 (+)

Expression


Co-expression Network