G6421


Basic Information

Item Value
gene id G6421
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37315645 ~ 37318146 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU7861
caagatttatttgttttgaaaacaataattcatgCAATTTTACAGCACTTGTAAACACAATCATTGGGGATAGATGTTAAATGTGTATTGCGTCACAATAATCTATCACTTACATTATAAAATGGAATGTTTTTCAGCCCAAGGTCCCTTTAATTCATATAGAGAAGCTGAGGAATCTATGCTTCTTTTGAATGTTATCTGGGTGACATCATATATTTATGGTTTGAATCATACTATCAACTGTGTGACAAAGGGAACTGTTCAAGTAACACAGACGTTTATAGGAATGTAATTTATTGCTCCAACAGGAAGAAAAAGGCAATGTAGTCAGGAAGCACGACAGCATAATCGCCATCAGCAAGGATTGTCTTCATTAAATTGGTTTTAAAGTGAACACGGTCAGCTACTTTTGAGATCTCTCTCACACAACCCAGCCCACCAAAATGAGCACCATGAAATCTCTCTTAAAATAGAAGCTTTAGAAAAGAACACAATTTACAGAAAATTAGTAAACCATTTTTTCTACTTTGGATTTTATTTGCTTCAACTCTTACTATGGAAAGAGACTTCCAGTTACATTAATTACGAAGAAAACATAATGAGAGAGAAATGGTAGTACACAAACagacacgcgcacacacacaaggtCAGGGATACAGAAATGACCCCTACACATTAGTTCACAACTAAGGGGGCACCTACAAAACTTGCTGATATCTGAGGACATAAGGATGATCATTTATCAatcattcataattcataacaaACGCAGCACAGACCAGTATCCAGAACAACTATATAGCTAAACTGCTAGCAATGCAGCAGAACAGGCCAAGGCATACAAATGGAAACAACTAAGAATCATTATTTCACCTTCCAATGCTAAGTATTTCCAAACAAGCATTCATCTTGCAGCTGATTGCAATTTCACAGCAAATCTCACCACTGCAAGGTAATCAGTAAACCGATGTCCTCAAGAGTCCTGTATGACACTGAGTTGTAGACCATCTTAAATGTCTAAAACAAGACAATCTATAATCCCAAACCATAGACAGAAGCTAGTTGAAAACCTGGAGGTGATAACCTGAAGGTTTGcggttattttaaataagcacCTAGAGGAGATACTTGAAATAGAAAGTACATTTCTAAAGAAGCAATATTCCTTTTTATGTATCTTTATCAAAATGATCACATAGACTCCGCCAGACTGAACCTAGGTTACTAATAATCATAGAAAATAACAGTAGCATATTTCATAtctgattttcatttaaaattccaTTTGTCCCCATCATTTTCCACTGCCATTGTCAATGGAGTGCAGATTTAATTGGAGGTACAAATCAGGGTCATCACTTAAGTTTGTGCATTCAGAGTATATCATGACAGGCTGTCTGCATGTTGCCATTTACATACCTCCCAGGCAAAAATAAACTATCCATCTGCATTTGAATCTCAATATATGATGAACAAAGCTACAACAGTAGcaatcactttattttatttacatacacaacTACTGATTTGCCCAATCTAAGTAATTTTGACACCAATTTCAAATATAGCGCTAATGTTACCAATCGTTCATGTTTAAGGCTTCCCCTTGAAGCAGTTTTCTTGAGAATGTCAGTCACCCTAAAATAATTAAccattacatttcatatagtgtcaaaatcataacaaaacaaaacacattattgtgtatACTTACAATGTCACTGGCAGTCAAAAACCCTTCTCTctcaatattgtttattataaacTCCATGTACAAGGATGGCCTAGATTATCAGTAGTTATCCTCTAAATGCCTTTAAACAAATTATCAACTTTTCCCACAAAGGTTATAACCCTAGAACTGCCTTGGTTTGCTTTTATCTGgcaatgtagtttattttatggggggggggtgcattaTATCCCAATTATTAGACTAGTGGATTTCACAAGATTCTCATTTCTCATGAAAATGTACCGGCTCAGAAAAGATTAGGCTCTGAATGGGCAGAATAGCATGAAAGATTTATAGATTAGTTAAGCAAACCTGCAGAATTACCAGctttagaaaaaactaaaaaggatATAAAGCATTGTATTGAGTATATGTGAAGTAACTGATGACTGTGGTTAACATGCCAGCGCCAATTTGGCAGAGCCCTTTTTCTCCTTGAGGACTGAAATTGTAAGGCAAAATAATCTATTCAAAAAGGAGTGGTTTCACCAATCAAActcaaatatttatgtttattttataaaccacTGATGagtcttttgttattttctttttcttttgggggTGTTGGACTTATATTCAGGAAAATACACTTATTTTGGATGctctgaaaaaacatttcacattatcTGAAGGACAAAGGAGcgagtgtgtttttgtttctaccTAAAAAAGTATTAGTAGACAGTATAATTATCTCAAgcctttactatattttatatatgttaaCACTTGTATTTTAGGATTTATACAGGCACAATAGTGTT

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7861 True 2502 lncRNA 0.43 1 37315645 37318146

Neighbor

gene id symbol gene type direction distance location
AMCG00004193 LOC104951820 coding upstream 84437 37198923 ~ 37231208 (+)
AMCG00004190 NA coding upstream 376098 36936904 ~ 36939547 (+)
AMCG00004191 NA coding upstream 396655 36912646 ~ 36918990 (+)
AMCG00004192 NA coding upstream 411551 36884358 ~ 36904094 (+)
AMCG00004187 enah,LOC107553420,LOC102788251 coding upstream 441776 36790434 ~ 36873869 (+)
AMCG00004197 LOC107698324,LOC104954172 coding downstream 75956 37394102 ~ 37417947 (+)
AMCG00004199 NA coding downstream 109303 37427449 ~ 37445287 (+)
AMCG00004206 NA coding downstream 158143 37476289 ~ 37478687 (+)
AMCG00004205 NA coding downstream 160684 37478830 ~ 37485632 (+)
AMCG00004198 NA coding downstream 211616 37529762 ~ 37545788 (+)
G6405 NA non-coding upstream 50141 37158176 ~ 37265504 (+)
G6383 NA non-coding upstream 287399 37028039 ~ 37028246 (+)
G6321 NA non-coding upstream 533415 36782012 ~ 36782230 (+)
G6320 NA non-coding upstream 534228 36780561 ~ 36781417 (+)
G6319 NA non-coding upstream 536495 36778880 ~ 36779150 (+)
G6427 NA non-coding downstream 19380 37337526 ~ 37341014 (+)
G6428 NA non-coding downstream 25915 37344061 ~ 37344445 (+)
G6471 NA non-coding downstream 196736 37514882 ~ 37516498 (+)
G6573 NA non-coding downstream 937083 38255229 ~ 38255483 (+)
G6585 NA non-coding downstream 1098452 38416598 ~ 38418776 (+)
G6369 NA other upstream 315487 36999357 ~ 37000158 (+)
G6328 NA other upstream 423899 36861547 ~ 36891746 (+)
G6314 NA other upstream 541122 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 617760 36687630 ~ 36697885 (+)
AMCG00004167 NA other upstream 1037411 36261788 ~ 36278234 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 514477 37832623 ~ 37847720 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 3008264 40326410 ~ 40341235 (+)
G7094 NA other downstream 4141430 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 4892284 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 5370633 42688779 ~ 42691109 (+)

Expression


Co-expression Network