G6819


Basic Information

Item Value
gene id G6819
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40015267 ~ 40034323 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU8358
GCAACTCCTCAGCCCTAAAGGAACTTCCTTCCTCCTTCCAGTCACAGGCATGGGATGGGGCTCTTataaagcagcagcagagaCGAGTGGCATGAAATCGCTGAAGTTTTCCTATAGGCACCGAAACTTTGCAGCGAaggattgtttaattttaaatattagacGACTTGACAATCATAGTGCTCCTTACAGTGCAGAGAATGAAGGCTTTACTTAGTATTCTTGCCGTTGGTCAACTCTTCTTGCAAGTATTAGGACAATCCCCGAAAAGCGCCTTATGCGTGGCGAACGACTGCTACTCCGTTATCGGGGATCCAACAGATTTCCAGACAGCGCAGGATACATGTTCGAGGCAAAATGGACATTTAANNN
>TU8359
GCAACTCCTCAGCCCTAAAGGAACTTCCTTCCTCCTTCCAGTCACAGGCATGGGATGGGGCTCTTataaagcagcagcagagaCGAGTGGCATGAAATCGCTGAAGTTTTCCTATAGGCACCGAAACTTTGCAGCGAaggattgtttaattttaaatattagacGACTTGACAATCATAGTGCTCCTTACAGTGCAGAGAATGAAGGCTTTACTTAGTATTCTTGCCGTTGGTCAACTCTTCTTGCAAGTATTAGGACAATCCCCGAAAAGCGCCTTATGCGTGGCGAACGACTGCTACTCCGTTATCGGGGATCCAACAGATTTCCAGACAGCGCAGGATACATGTTCGAGGCAAAATGGACATTTAANNN
>TU8360
GcttgcataaatacatattttcgtGAAAGGCAGCGGCTTTATTCCCAAGTGCGCAATAGTTACCCAAATGGCACGGAAACGCATTTCTTCTTTCGCTGCTACACTTCTGAGTCATTCCGTGCTTTCCGgatttacagtgttttaatcAACTCCACAAGCAGGCACAATGTAGGCTAACTTCAAAGACACGCAGAACTGCACCCAATAAAACAAGCAACTTCCCCTTTCGAGTCACAGTGTTTACTTCAGCGCAAAGCACAAGTCAAGGTTTAGGGCACCGTGACAGTGAAAGCGCTGGAGCGAATTACTTTACTGGAGATATAATACAATCTTATTGTCGCAGTCCTCCTTATAATGCAGACCATTAGGGATTTAGTTCGAGTTCTTGTCGTTGTCCAGTTCATTTTGCATGGATTAAGTCAAACTCTGAAAGGCAACCTGTGCTCAGTGAACGACTGCTACTCCGTTATCGGGGATCCAACAGATTTCCAGACAGCGCAGGATACATGTTCGAGGCAAAATGGACATTTAANNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8358 False 372 lncRNA 0.45 2 40015267 40034323
TU8359 False 372 lncRNA 0.43 3 40015267 40034323
TU8360 True 535 lncRNA 0.44 2 40020076 40034323

Neighbor

gene id symbol gene type direction distance location
AMCG00004249 NA coding upstream 2892 40010525 ~ 40012375 (+)
AMCG00004246 tmem151b coding upstream 122441 39885665 ~ 39892826 (+)
AMCG00004236 hsp90ab1,hsp90bb coding upstream 168568 39839368 ~ 39846699 (+)
AMCG00004235 NA coding upstream 417013 39592943 ~ 39598254 (+)
AMCG00004240 NA coding upstream 455340 39559492 ~ 39559927 (+)
AMCG00004248 NA coding downstream 3388 40037711 ~ 40054452 (+)
AMCG00004251 disp1 coding downstream 25623 40059946 ~ 40083528 (+)
AMCG00004254 aida coding downstream 150554 40184877 ~ 40194871 (+)
AMCG00004256 NA coding downstream 186201 40220524 ~ 40228831 (+)
AMCG00004255 NA coding downstream 201205 40235528 ~ 40248464 (+)
G6807 NA non-coding upstream 70212 39944500 ~ 39945055 (+)
G6771 NA non-coding upstream 244569 39770465 ~ 39770698 (+)
G6769 NA non-coding upstream 246660 39768384 ~ 39768607 (+)
G6684 NA non-coding upstream 866973 39122547 ~ 39148294 (+)
G6676 NA non-coding upstream 1048377 38966678 ~ 38966890 (+)
G6840 NA non-coding downstream 54285 40088608 ~ 40088914 (+)
G6847 NA non-coding downstream 75877 40110200 ~ 40113951 (+)
G6850 NA non-coding downstream 114639 40148962 ~ 40198962 (+)
G7048 NA non-coding downstream 943676 40977999 ~ 40978319 (+)
G7078 LOC103376870 non-coding downstream 1260975 41295298 ~ 41364066 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 2167547 37832623 ~ 37847720 (+)
G6369 NA other upstream 3015109 36999357 ~ 37000158 (+)
G6328 NA other upstream 3123521 36861547 ~ 36891746 (+)
G6314 NA other upstream 3240744 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 3317382 36687630 ~ 36697885 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 292087 40326410 ~ 40341235 (+)
G7094 NA other downstream 1425253 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 2176107 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 2654456 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 4583862 44618185 ~ 44640732 (+)

Expression


Co-expression Network