AMCG00005356 (plpp6,LOC107683852,LOC107739850,LOC107669136,LOC107712867,LOC107597802)


Basic Information

Item Value
gene id AMCG00005356
gene name plpp6,LOC107683852,LOC107739850,LOC107669136,LOC107712867,LOC107597802
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22020862 ~ 22024488 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005356
ATGCCGTCTCCCAAAGCCAAGAGCAGCAGCCCCCGCAGCGGCAGCGTCCCGGCCCTGAGCAGCAACGGCCGCTACGAGTTCCTGTCCCTGAGCCGGAGCCCCCCGCCGCACCTGCTGCAGCGCCAGGGCTCGGACCCCACCTCCGCCCGCCTGCGGGCCTCCGAGAGCCCGACCCGCCGGCGGGGCTCCGGCTCCTCCAACGCCTCCTCGTCCTCCGCCTCCGGGGCGCCGCCGCTGCCCGAGGAGGACTGCATGCGGCTGAACCCGTCCGTGCTGGGCATCGCGCTGAGCTCGCTGCTGGCCGTGGACCTGTGGCTGTCCAAGCGCCTGGGCGTGTGCGCCTGCGAGGACTCGGCGTGGGGCAGCGTGCGGCCGCTCATGAAGCTCATCGAGGTGTCCGGCCACGGCATCCCCTGGATCGCCGGCGCCGTGTACTGCCTGTACAAGAGCGACAGCGCCGCCGGCCAGGAGGTCATGCTCAACCTGCTGTTCGGTGAGTCCCACACCCCCATCCACTGTCTGAGCAGCGCCATCCTCTTCACCgccatctccctctctgtctgtgttgcgtcagtgtgtgagAGACTGAATGGCAGTGCGCGGTGGGTaacccctctcctctccctctccgcaGCCCTGCTCCTGGACGTGGTGCTGGTGGGCGTGGTGAAGGCCGTGGTGCGCCGGCGCCGCCCCTCCCACAACCGCATGGACATGTTCGCCACCTTCTCGGTGGACCGCTACTCCTTCCCCTCGGGCCACGCCACGCGCGCCGCCATGTGCGCCCGTTTCCTGCTGGCCCACCTGGTGCTGGCGGCCCCCTTGCGCGTGCTGGTGCTGCTGTGGGCGGTACTGGTGGGCCTGTCCCGGGTCATGCTGGGCCGCCACAACGTCACCGATTACAACCTGGTGCAGGGGCTGTGGCTGTCCCCCGCCGGGCTGCACGGcctgctggggctgctgggcTGA

Function

symbol description
plpp6 Predicted to enable sphingosine-1-phosphate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human PLPP6 (phospholipid phosphatase 6).

NR:

description
PREDICTED: phospholipid phosphatase 6

GO: NA

KEGG:

id description
K22904 PLPP6; presqualene diphosphate phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005356 True 969 mRNA 0.71 3 22020862 22024488

Neighbor

gene id symbol gene type direction distance location
AMCG00005350 NA coding upstream 83535 21932366 ~ 21937327 (+)
AMCG00005348 NA coding upstream 92389 21920884 ~ 21928473 (+)
AMCG00005349 LOC107687326 coding upstream 100965 21917115 ~ 21919897 (+)
AMCG00005344 NA coding upstream 142328 21873027 ~ 21878534 (+)
AMCG00005335 LOC106569412 coding upstream 262980 21756187 ~ 21757882 (+)
AMCG00005358 NA coding downstream 35 22024523 ~ 22031098 (+)
AMCG00005357 NA coding downstream 35721 22060209 ~ 22061467 (+)
AMCG00005364 NA coding downstream 92001 22116489 ~ 22122971 (+)
AMCG00005366 NA coding downstream 99294 22123782 ~ 22130249 (+)
AMCG00005370 NA coding downstream 105797 22130285 ~ 22132482 (+)
G147027 NA non-coding upstream 63817 21956601 ~ 21957045 (+)
G147024 NA non-coding upstream 70275 21950328 ~ 21950587 (+)
G147022 NA non-coding upstream 72244 21948086 ~ 21948618 (+)
G146928 NA non-coding upstream 275411 21744879 ~ 21745451 (+)
G146915 NA non-coding upstream 308079 21710357 ~ 21712783 (+)
G147066 NA non-coding downstream 57156 22081644 ~ 22087344 (+)
G147029 NA other upstream 36718 21957440 ~ 21984144 (+)
AMCG00005351 NA other upstream 51170 21966858 ~ 21969692 (+)
G147025 NA other upstream 67980 21952569 ~ 21952882 (+)
G147021 NA other upstream 72871 21945558 ~ 21947991 (+)
AMCG00005345 NA other upstream 133294 21883199 ~ 21887568 (+)
AMCG00005365 sec22b,sec22bb,LOC102790162,LOC108439390,LOC107676649,LOC100705437,LOC107585928,LOC107548814 other downstream 108077 22132565 ~ 22145610 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G219041 NA non-coding CI01000051 null 3231762 ~ 3232556 (+)