AMCG00005428 (rad51c,LOC107691693)


Basic Information

Item Value
gene id AMCG00005428
gene name rad51c,LOC107691693
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1462232 ~ 1467875 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005428
ATGCGCATCACTGCTCCTAACCCGAGGTCCCTGCCAGTGGGTTATGATGTGGAAGCAGATGGGGCCCTGCAGTTCGTATCTCTGCCACACGGGGGAGCCAGCGCGCAGAAGAGGAGCTGCTTCCTGGTCTGCAAAGATGGAGGGGCGCTGGAGCAGGTCCCGGTGCTGCGGCGGCGACACACACGCCAGATCTGCGGGACTTTGACAGCAGAGAGACCGGTGCATGACAGTGTTGTTGCGGCCATGCAGAGGGACGTGTCCAGCTTCGCCTTCGCCCCGGCCGTCAAAACCCGGCTCCTCGCCGCGGGCTTCCACTCCTCCAGGGACCTGAGTGACCTCCGACCCCTGGAGCTCAGCAAAGagGCGGGGATCTCCCAGGAGGAGGCGCTGGAGGTGCTGCAGGCCGTGCGCGGTGAGCCGGGCCAGCGGGGGGCGCAGGCCGAGGGCAGGCTGACGgcgctggagctgctgcagagggagCAGGCCTTGGGCTCCATCGTCACGTTCTGCTCCGCCCTGGACCGCACGCTGGGGGGGGGCGTCCCCATCGGCAAGACCACCGAGATCTGCGGGGCGCCCGGGGTGGGCAAGACACAGCTGTGtATCCAGCTGGCCGTGGACGTGCAGATCCCCCTGTGTTTCGGGGGTCTGGGTGGGCAGGCGGTGTTCCTGGACACGGAGGGCAGCTTCCTGGTGCAGCGGGCGGTGGATGTGGCGGAGGCGGCCGTGCAGCACTGCGCACTCCTGGCAGAGGACGCAGAGCAGCAAGACGCCCTGCAGCGGTTCACCGTGGACAACATCCTCTCGCAGCTCTTCGTCTTCCGATGCCACGACTACGTGGAGCTGCTGGCACAGGCCTACCTCCTGCCCGACTTCCTGTCCCAGCACCCCGAGGTGCGCCTGGTGGTGATCGACAGCATCGCCTTCCCGTTCCGCCACGACTTCGAGGACCTGTCCCTGCGCACGCGCCTCTTGAACGGCCTGGCGCAGCAGCTCATTCAGATGGCCACCCAGCGCGGCGTGGCGGTAGCTCTGACCAATCAGATGACCACGAAAGTTGGGAACGGCCAGTCCATGCTTGTGCCTGCTTTAGGTGAAAGCTGGGGCCATGCTGCCACCCAGAGACTCATCCTGCACTGGGAGGGGCAGCACAGACTGGCGTCGCTGTACAAGTCTCCCAGCCAGAGAGAGGCCACCGTGCCGTACCACATCACGGCGGGCTGTGAGCGCAGCGGAGACTCGGTTTGTGCGCAGTTAACAGAGCTGGAGCACAATGGGGACCTCGCTCCTGTCACGGTCCCGCAGACGGACACTCAGGACACACGGTCCTGTCCTGCGCCTGTCCCCCTGGACCGACTCCTGCTGGGCGCTGAGGTCGCCCGCCTCATGTCGCTACTCTGTCAAGTGACTCCCATAGGTGCTTCAATGCTCAGCTCCTCCATTGTCTACTCACATCTCTATTAA

Function

symbol description
rad51c Predicted to enable ATP binding activity; ATPase, acting on DNA; and DNA binding activity. Predicted to contribute to crossover junction endodeoxyribonuclease activity and four-way junction DNA binding activity. Predicted to be involved in meiotic DNA recombinase assembly and reciprocal meiotic recombination. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be part of Rad51B-Rad51C-Rad51D-XRCC2 complex and Rad51C-XRCC3 complex. Predicted to be active in replication fork. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group O and hereditary breast ovarian cancer syndrome. Orthologous to human RAD51C (RAD51 paralog C).

NR:

description
PREDICTED: DNA repair protein RAD51 homolog 3

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K10870 RAD51L2, RAD51C; RAD51-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005428 True 1464 mRNA 0.65 11 1462232 1467875

Neighbor

gene id symbol gene type direction distance location
AMCG00005427 ppm1e,LOC102780278 coding downstream 25924 1431904 ~ 1436308 (-)
AMCG00005417 NA coding downstream 161685 1299366 ~ 1300547 (-)
AMCG00005389 NA coding downstream 350342 1109601 ~ 1111890 (-)
AMCG00005473 NA coding downstream 399437 1059253 ~ 1062795 (-)
AMCG00005475 porb,LOC107728227,LOC107598574,LOC107703971,LOC108424088 coding downstream 410824 1036096 ~ 1051408 (-)
AMCG00005426 NA coding upstream 12301 1480176 ~ 1485828 (-)
AMCG00005440 NA coding upstream 49608 1517483 ~ 1523285 (-)
AMCG00005439 hip1,LOC102790400 coding upstream 55785 1523660 ~ 1536868 (-)
AMCG00005438 NA coding upstream 102878 1570753 ~ 1574756 (-)
AMCG00005445 fzd9,LOC106567714,LOC106612580,LOC107713270,LOC107691950,LOC107709816 coding upstream 167870 1635745 ~ 1637496 (-)
G152197 NA non-coding downstream 3570 1458237 ~ 1458662 (-)
G152178 NA non-coding downstream 63840 1397341 ~ 1398392 (-)
G152085 NA non-coding downstream 391576 1065459 ~ 1070656 (-)
G152071 NA non-coding downstream 452493 998354 ~ 1009739 (-)
G151979 NA non-coding downstream 771290 690659 ~ 690942 (-)
G152320 NA non-coding upstream 224874 1692749 ~ 1693555 (-)
G152335 NA non-coding upstream 278078 1745953 ~ 1752738 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding upstream 473148 1941023 ~ 1946800 (-)
G152424 NA non-coding upstream 699729 2167604 ~ 2175954 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding upstream 826958 2294833 ~ 2318672 (-)
AMCG00005419 NA other downstream 85759 1371342 ~ 1376473 (-)
G152133 NA other downstream 126792 1219327 ~ 1335440 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 1341685 108398 ~ 120547 (-)
AMCG00005399 NA other downstream 1362562 94352 ~ 99670 (-)
AMCG00005407 polr2j,LOC107587688 other downstream 1395199 62355 ~ 67033 (-)
G152277 NA other upstream 38065 1505940 ~ 1507628 (-)
G152271 NA other upstream 53867 1521742 ~ 1615497 (-)
AMCG00005461 eif4h other upstream 240808 1708683 ~ 1723500 (-)
AMCG00005532 NA other upstream 729479 2197354 ~ 2329684 (-)
AMCG00005517 NA other upstream 938650 2406525 ~ 2410247 (-)

Expression


Co-expression Network