AMCG00005432


Basic Information

Item Value
gene id AMCG00005432
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1557840 ~ 1567204 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005432
GCGGCGCCGCCATGTCTCCAGGAGAGAAGCGGCGGGTCGCGCTGATCTCTGTCGCGGTCTTGGCTGTCTCGATCCTCTGCCTAGCTCTTTACTTTATACCCACTTTTCTTTACGTGTTACTCATCCTCGGTGTTTGCTGTGCGGCCTGCTTTTATCACAACGGCGGTCCGTCCCAGCACACCAGGTTAGGCCCTCATCCTCGACCTGGCCTGATCATCCCACCGGTTCTCAGACGCTGGTTGCCGGGGAAGACTGCGAACGGGGTGCCGTCGGCAGGCAGGGTCAGCTCCAGGGGCAACAGGGCTCGATTCATTAAAGGCAACCCCCGGGATTCGGCTCCACACAGCCGGGACAGGCGCTGGGATAGCCAGGGCGCCTCTCGGGGAGAGAGCGAGGAAGGCGGCTCGTTGTTGTTCAGCCCCCGGGATATTCTCATGGGGAGCTACCTGGGCAAGGCTGACAGCCCCGCCACAGCCGCGTCCCCAGCGAGGCGAGGTGGGGGGACTCTGGATCTGCGGGAGAGGCTGACCCGACCCAACAGTGCCGTGCACTCCCCCAACAGAAGGCTGTCATTCGGCAGGGAGCCGGTGGCCGTGCCGGGCCGGTTCACCATCACCCCGCAGAGACACTACCCCCTGCAGCAAGCTGGCTCCTCCTCCCTGGGTGTGCTGCCGCCTCTGCAGTGGGACGGCTACCGCAGGAAGAACGTCCTGACGCCACGCAACTCCGGCGCCCTGCACAGCCCGGTGACTGTGAGGATCGCCAGGCCGGACGCCAGCCGCCTGCACTCCCCGCTCTTCGACCAGGTGTCCTCCCCGCTGGCTCCCCTGTCCCCAGGGTTGGGGGCGCCCTCTGACCCTTGCGCGAAGGAAACGGTGCTGAACGCGCTCAAGGAGAGCCGCAAGAGGGAGAACGATGAAGAGGAGGAGCGGGGCTACAGTGCCGGGCAAGACAGCAAGAGGAGGCGGCATGACAGCAATGGCAGTGCCCACTCAGCCTTCGAGCCGCTCCTCGCCAACGGGGCTCCCTCCCTCCTGGTGCCCAAgcccgGCACTCTGAAGAGAGGAGCGAACTCTCTGGCCCCAGAGGAGTCGGTGATGAAGAGGTCTCGTACTTCATCCATCAGCTCCCTCAGCTCGGCGCTGAGCCCCGGGGGGACACTGGGCTCGGCCCGCAACCCCATCCTCAGCTCCTACAGCTCCTCCAGGGGCTTCGCACAGaagaagaCTTCTGCCCTCGGGCTCTCCCCCCTGTCCAGCCCAGGCTCCTCTCGCTCCCAGACGCCCGAGCGGCCCCCCAAGAAGCCCAGggAGGACGAGTCTCGGTCGTCCGGCTTTGTGTCCCCGGCCAAGTCTGACCGAACGCAGAAGGAcatggacacagagacagTGTCCCCCTCTCCGGCGCTCAGGCAGCCCTTGGCGGTGTCCTCTCCGGCCTCCGGTGGCACGGACAGCAGCCGTAAGCGCAAGATACAGCTGGTGTCCAGCCGCAGGGGCGACCACATCTCCCTGCCCCCTCCCCCGGAGCTCGGCTACACCATCACGGTGGGCGACCTGGACTCTGAGAAGAAGGCGGCGCTCAGCAGGATCCGGAAGGTTCTGGAGGAGGCCGAGCCGGTGAAGACCACCGCAGCCCCCAGTGTTCCCACCTTCTCCCCGGTCGCAGTGTCCAGCCCTGGCCCCACCAGTCTCCTGCTGGGCTTGGGCACCACCCTGGACCCCACACCCTCGGCAGCCCCCACCACCACTGCCCCGGCCCCCATGGCAGTCCCTGCTGGTGTTGCCAGTGCTTTCACCGCCGCGATCACCACGGCTGCCCAGCCCTTCCCGGCTGCTCCTGCCACCAGCGCCGCCATCACCAACCCGCTGCTGGAGTCCCTGAGGAAGATGCAGAACAGCCCCTCCGCCAGCAGCCTGGCCCCCtcagCCGCTCCAGTGATCAGTGTGGCGGTGCTGAAGGGTCCGACGCCGACTCCAGCCCTGTCCAGTGCGGGTCTGTCCATGTCCAGCCCGGCGGCCCCTGCCTCCCTGCTGCCCAGTGCCGGCGTGGTGAAGACTGAGCCCAGCCTGGCCCCCCCTCAGCTCTCCTTCTCCGCAGCTCCCTCCACCCTGACCCCCTCCGGCTCCCTCTCCACCTCGGCCTTCAGCCAGGTGCTGCCCGGCCCGGCCACCCCCAGCACCGCCGCCGCTGCCTCCTCCCTGGCGGGGGCTGTGACCTTCGGGATGCAAGGGATGGCTCAGCCGGCGgtccctccctcctccaccAGCACCTCCTCCGTGTCCACGGGCAACCTACTCCCGTCTGCCTTCAAGCCCGTGTTCGGGACCCCCGCCCCGGCcgtcaccaccaccacctctgCCGCGGCACCGAGCTTCAAGCCCGTGTTCGGGAGTGCCACGGCGGGCAGCGCGTTCGGGCAGCCGGCCCCCACGCCTGCCGCCACCACGACCAGCAGCTCTATGTTCGGTGTGATCTCCTCAACCCCGGCCACTGTGTCCGGCGCCCCCACACCGGCCAAATCTGCGTTCGGGAGCTGGGGAGCCCCAGCCCCTGCCAGCAACACGGCCCCCACCACCACCGCAGGAAGCTCCTTCCAGTTCGGCACCCCCCCGGCTGCCACGGCCGCTCCTGCTCCCTCCTTCAACTCCACCGGCCCCATGTTCCAATTCGGCAAGGCAGCGGCCGGTGTCCCCACCCCTAACCCCGCCCCCACTGCCCAGCCCAGCTTCTCGTTCGGCCAGCCCCCCAGTGGGCAGCCGGCCTCCACCACCACGTTCGGGGGCTTCGGCATGTCGGCCGCCCCCATCACCACCACGGCCCCCGCCTCCATCGCCGCCGTCCCTGTCTCCACCTCGGCCTCCGCCTCGACGACAGCCCCCCAGGCCAGCCAGACTGGCTTCTCCTTTGGGAAGGCCTTTGACGGCCCGTCTGCGTTTGGCAGCGTGGCCCCCTGTGGCCTGGCCAAGCCCTTCGGGTTCGGGGCCGGCGGTGCCGTGGCGGCGACCGGCACTTCGGCCTTCGCTTTCGGAGGGGCAGCAACCAGCACAGCTGCCACGGCGCCCCCCCCCTCCTTCGGGACAACCGCCCCGCCTGCGTTCGGCAGCGGCTCCTCCGGCTCCACCGGCTTCTGCTTCGGGGCTCCAGCCGCCACACCCCCTGCCACTGCCCCTCCCGCCTTCGGCTCCGCCACGCAGGCCTCCGTGGCCCCACCTGCCTTCGGCTCTACCACACAGGCCTCCGTGGCCCCTCCCGCCTTCGGCTCCACCACGCAGGCCTCTACCGGCCAGCTCAACCCCGTCACCGGCTTCTCCTTTGGGGGGCCCGCCACGACCCTGCCCAGCACCGCCCTTCCCAGCCAGAGCGCCCCCCAGCCCACCCCGGGGGGGTTCAGTTTCGGAGCTTCCCTCTCCAGCAGCCAGTTCGGAACGCCCGCCCCCCCCGCACAGAACCAGACCTTCGCCTTCGGCAACAACAAGGACGGCAAACCTGCATTCGGTACCTCAACCCCTGCTTTTGGCCAGGGCAGCGCCGGAGGCCCCATCCCGTTCGGCAGCCCCGGCACTCCAGCCCCCGGCTTCAGCGCCCTCCCGGCCTCCCCATTCGcGGCCACCCCAGGGGCCTCTTTCTCCATCGGCTCCGGCTCCAAGCCCTCGGCACGGCAGCGGCTGCAGGCCCGGCGGCAGCACACACGGAAGAAGTGA

Function

GO: NA

KEGG:

id description
K14316 POM121, NUP121; nuclear pore complex protein Nup121

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005432 True 3704 mRNA 0.69 13 1557840 1567204

Neighbor

gene id symbol gene type direction distance location
AMCG00005435 NA coding upstream 51123 1496852 ~ 1506717 (+)
AMCG00005436 smg8 coding upstream 61275 1491471 ~ 1496565 (+)
AMCG00005437 NA coding upstream 67218 1486213 ~ 1490622 (+)
AMCG00005423 NA coding upstream 77669 1469176 ~ 1480171 (+)
AMCG00005422 trim37,LOC103132205,LOC106941548 coding upstream 132504 1408433 ~ 1425336 (+)
AMCG00005433 NA coding downstream 6434 1573638 ~ 1578641 (+)
AMCG00005444 NA coding downstream 12626 1579830 ~ 1584712 (+)
AMCG00005443 NA coding downstream 20207 1587411 ~ 1597651 (+)
AMCG00005442 NA coding downstream 31321 1598525 ~ 1613076 (+)
AMCG00005441 NA coding downstream 100514 1667718 ~ 1671361 (+)
G152198 NA non-coding upstream 95901 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 99093 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 303881 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 500445 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 543460 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 688161 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1504746 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1616617 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1632128 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1693006 3260210 ~ 3260429 (+)
AMCG00005434 NA other upstream 40260 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 178538 1376468 ~ 1379302 (+)
G152159 NA other upstream 189884 1367014 ~ 1367956 (+)
G151969 NA other upstream 1020477 536751 ~ 537363 (+)
G151967 NA other upstream 1157975 398925 ~ 399865 (+)
G152267 NA other downstream 178756 1745960 ~ 1748934 (+)
G152337 NA other downstream 232607 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 362251 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 936706 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 1278013 2845217 ~ 2849608 (+)

Expression


Co-expression Network