AMCG00005484


Basic Information

Item Value
gene id AMCG00005484
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2512222 ~ 2520954 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005484
GCTCTTCCGTCACTGTCATGGCTGCCCAAACGGTGCTGCCGGGCCCGGTGCTGCCACCTCTTCACGCCGACAACTGCGACCCCCGGCCCGCAGGCCTCTGCTCGGACCCGGGCGACTCCAGCAGCCAGTTCAGCCGCTGCTACTCCAAGCTGCGCTCCCTCCGGCCCGCCGACGGCGAGAGCTGCAGGACCGAGATCAACCTGCTGTTCGACCAGCTGATCTCCGACAACTACAGCCACCCCTACGcgggcagcagcagcatccGGCCGGAGGATGTGTGCGCTCTTCTCGTACAGGCCAGCCGGCTTGTCCAGTTTAGCCAGGAGCATCTCGTCAGCAAACTGTGCCAGCTCATCCACCACCTCCTCAACAGGCTGCAGGTGATTGTGGACGACCAGAGTCTGGACTCGCTGGTGTCGTATGCTATCCAGGCCCTGCGAAGCTGCAACTGCTGGACCCACAGCGAGATCCTCCAGGCGTTGGCTGCCCTGGTCTACGGCAATGGGCCGAAGTGCCAGAGGCATCTCCCTGACCTGCTGGGCCGAGATGGCATCCTACTGTGCTACAGCGACCTTGGCCAGCCGGACGTTGAACTGCGCCGATCTGCCATACACTGCATGGCCAACCTGTGCCTGGGTATGCCAGGGCAGCCTTATCTGGAAGAGCCCTATCGTGGCGTCTGCTTCCGGACCTTCCTGCAGATGCTTCAGTCCCCCAAACCTCTCGGCGTGGACGACATCATCTTTTGCACGCTGCTGGCGAACGCTCTGAAGGGAGTGCAGTGTTTTCTGAACGGAGGGAAGGTCAAGATGGGTCCCGACGAGCAGCTCGGCTCTCTGCTGGCCGTACTGAAGAAATATATGTTCTACGGTCTGCCTGGGATGACCTTGGAGATGCCGGCCGTCCTGTACCCCGCGCCCCTCCCGCAGTATGAGGGGACGACCGCAGTGAAGCCCGAACTGCCACGGGACGTCCAGAGCACATCAAAACCCACAGGGAATAAGAAGCGGAAGTCCCGCGGGCGGGGCCGTAAGGCGGGGTCGGAGGGCAGGCAGGATGAGGACCCTGAGGAGCCATTGCAGGAGGCGGCGTCGTGGGCCGGACTCTCGCCTCTAAAGGCAGGTGGAGGGGTAGAAGATTCTCGGAACCGCCCCAGTTGGACTGCCCTCCGCCCCCAGGGCCACCCAGCGGGGCGGGACAGAGACGGCGCCGCCCCCCTGTATCCGCACTGGAAGAAGATCAGCAGCTCTGACTCCGAGTTCTCCGACCCCGAGGGTGGCGTGCAGGGCAAGCTCAGGCTGTACCAGGCCAGGGTACGGCAGGGCGCTCTGCACTGCTTCCTGTCCTTGGTGAAGTGTGTGGAGAAGAGGGTGCTGTACGGATACTGGTCCTCATTCATCCCCGATGCCCCCGGGACCGGCGGCCCACCGTCCCTCACCCTGCTCACCATCGTGCTGAAGGACCCCTCCCCCAAGGCGCGCGCCGGTGCCCTGCAGGTGTTGTCCGCACTGCTGGAGGGCTCCCGGCAGTTCCTGTCAGCAGCGGAGGACACCAGCGAGCCACGGCGGGCCTTCACGCCGCTCTCCGCCACGCTGGCCGCCAGCCTCAGAGAGCTGCACCGCTGCCTCCTCCTGGCCCTGCTGGCCGAGTCCTCCTCACAGACGCTCACGCAGGTCATCAAGTGCCTGGCCAACCTGGTGTCCAACGTGCCTTACAGCCGCCTACGGCCCGGCCTGCTCAGCCCGCTGTGGAGGCAGATCAAACCCTACGTCCGCCATAGAGATGTGAATGTCCGGGTGTCCAGTCTGACGCTGCTGGGGGCCATCCTGTCGGCCCAGCCTCCCCAATCTGAGGTGGAATTGCTGTTGCGGCAGCCAGGGTCTGGGGGGGGCAGTGGCGTGTTGACGCCCCAGGAGCTCCGTAGCACCGACAACTGGCGGAAGCCCAACCCAGGCCCCCCCCACGCCAGGAGGGAGTCTCCCCCAGAGTCGCGGGACGCCCCCGGGGAGCCCTGCTGGCTGCTTCGCCTGTGTGTTTCGCTGGTCACTCTGCCCCGCGAGGACCCCTACTCCGACAGCGACACGGGCACCGCGCCGGGCAGCCCCTTCGAGCCCTCGCCTGTGCGGTTAGAGGCCCTGCAGGTTCTGGCTCACCTGGTGAAGGGCTATTTCTCCATCGCTCAGGCCTCCCTGCTGGAGCTGGGGGAGGTCAGTGCCAGCTGCCTGAGGGAGGCCGACCCCTCCATCCAACTGCATGGGGCCAAGctgttgGAGGAACTGGGATCAGGAATCATCCAGCAACACAAGTCTGATTCCCCTGTACCACCAGACGGCAGAGTTCCTGTCAGCCAGGTCGTTCAGTTCTGGACGGAAGTGCTGGGCGGCCCACTGACCGGAGCCCTGCAGAGTGAGCAGCACCCCACCCTGCAGACCAGCGCCTGTGACACCCTCTCCTCCATCCTGCCACAGGCCTTCAGCTGCCTGCCGGATAAGAGCCAGGTGTTGTGCATCACCGTGCTGCTGGGCCTGACGTACAGCGAAAACTCCCTGGTGAAAGCGGCTGCGGTGCGAGCGCTGGGCGTCTACATTCTCTTCCCCTGTCTCCGAGAGGACGTGATGTTTGTGGCAGACACGGCCAATGCCATCCTCACCTCCCTGGATGACCGCTCTCCAAATGTGCGCGCCAAGGCAGCCTGGTCTCTGGGCAACCTCACCGACACGCTCATTGTCAACATGGAGTCCGTGGGCCAGGATTTCCAGGAGGAGTTTTCGGACCTGCTGCTGCTCAAGATGTTGAAATCGGCAACCCAGGCCTCCAATGACAAAGACAGGGTAAAGAGCAATGCCGTGCGCGCCCTGGGCAACCTCCTGCACTTCCTGCAGCCCCAGCACCTGGAGCGGCCCAGCTTCGGCCCTCCGCTGGGGGAGGCGGTGCGGGCGCTGATCGGCACGGTCCGCGGAGAGGCCACCATGAAGGTGCGCTGGAACGCCTGCTATGCCCTGGGCAATGCCTTCCGCAACCCTGCCCTGCCGCTCGGCACGGCCCCCTGGACCTCCGAAGCCTACTCTGCCCTGACCTGCGTGGTGAAATCCTGCAAGAACTTCAAGGTGCGCATCAAGTCTGCCATGGCGCTGGCGGTGCCGGCCAGCAGGGAGTGCTATGGGGACCCGCCGCAGTTCGGGGAGGTGTGGGCCGCCCTGGCGCAGGCCTTGGAGAGGAGCGAGGACACTGAGGACTTCCTGGAGTACAGGTACTGCGCCAGCCTGCGGGCGCAGCTCTGCCGGGCCCTGCTGCACCTGCTCGGTCTGGCCCGCCCCGAAGACCTGCCTGGCGTCCAGGCCTCCATGAGCGAGAGGGGCGAGGCCATGCGGGGCTACCTGGTGCGCTACCACAGCGGAGGGGGCGAGGGGGACGAGCCCGGCGATTGTCCGGAGCCCCGGGAGAGGCTGCAGGGGCTGGAGGAGACGCTGGGGCATCTTCGGGGCCTGGAGGGAGACTGCGACCCCCCGGGGCCCCTGCTGCGGGTGCTGCAGTTCCTGGAGGGCATCCAGAAGAGCTGCCAGGAACTGCAGGCCGCCTGAGTGTGAGGAAGAAAAGCCCCCATCTGGGAAGGACTGTGCAGATTCCTCCCCTGCTGACACCACCGGCCTTTGAGAGCTCCTGTGCCATTGGGAGAGAGTTGTATTCCCTCTGTTTTGGAGAGTGATAGGGCTCTGTCCTTCCTGTTGCATTGGGGGTCCTGCACTTTTTATAAGGTGGAAGCCTACCAAGAGTTGCAGACCCccatatttaatttatactgAATTTTATCTTTTATCGCCAAGGTCTGAAAGTGCCGTACAATGGAAACGCCAATGAAAGCTTGTGGTTAACCATGCCCGAAACAGTCGATCAGATTGGAGGGCCATGCAGAAATGTACTGGATATatccaaagaaaaataaactgataaaaGTGTTTGATTTATAACCCTGTCTCCAGTGTTTTCGGATATGGAAACAATTGTCTCCAAATCTGCATGCAAAACTGATTGGTGGCCAGTAGAGGTTGCTGTTGTATTACAATCGGTTCATTAGCGGATGTGTGTTTGTACAAATCTGATGGGGACTTTGTAGCAGAAACCAGGACGAGAGGTTATTTGCCTACATTTCAAAGGAGCAAGGCTCTAGATTTACAGACAGTGTTTTGAAGGAGCAATTGCCAAAATTTGACGGgcttttaaagcaacaaaaagtGGTTCCTGACTTGCTGCAGCTTGGACAGTGAGCACCGAGGGGAGACCAAGGCTGCAGAGGGCACAGTGTGCTTCAGAGATTAGTGGTACCTGAAAAGATCCAGGATAGAAAAGCATTTGAATTGTCTTTTTACTAAATTGAAGTCCACCATGTCTTTGGAGAGTCTTATAAGATGTCTGAAATCTTACAGCTTTGTTAaatgtcctttttaaaaaaataattcatcctat

Function

GO: NA

KEGG:

id description
K24815 HEATR6; HEAT repeat-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005484 True 4464 mRNA 0.61 19 2512222 2520954

Neighbor

gene id symbol gene type direction distance location
AMCG00005483 LOC108431323,LOC108278759,LOC100705065,LOC107714048 coding upstream 10495 2495360 ~ 2501727 (+)
AMCG00005482 NA coding upstream 17985 2487213 ~ 2494237 (+)
AMCG00005512 aldoc,LOC107581922,LOC107661747,LOC107587231 coding upstream 27770 2480675 ~ 2484452 (+)
AMCG00005510 NA coding upstream 40371 2460248 ~ 2471851 (+)
AMCG00005511 NA coding upstream 54650 2447382 ~ 2457572 (+)
AMCG00005504 hnf1b coding downstream 25439 2546393 ~ 2565500 (+)
AMCG00005503 NA coding downstream 45435 2566389 ~ 2569710 (+)
AMCG00005502 synrg,LOC107727910 coding downstream 62445 2583399 ~ 2638908 (+)
AMCG00005493 NA coding downstream 313543 2834497 ~ 2844701 (+)
AMCG00005494 rab34,LOC108443499,LOC102306323,LOC102777300,LOC108278203 coding downstream 329138 2850092 ~ 2857112 (+)
G152397 NA non-coding upstream 188877 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1050283 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1053475 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1258263 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1454827 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 550996 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 662867 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 678378 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 739256 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 1202959 3723913 ~ 3761827 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 1546 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 565422 1929455 ~ 1946800 (+)
G152337 NA other upstream 708319 1799811 ~ 1803903 (+)
G152267 NA other upstream 763288 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 994642 1509502 ~ 1517580 (+)
G152588 rpl23a other downstream 324263 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 745420 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1761563 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 2039259 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 2693859 5214813 ~ 5241776 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000041_00503117_00526117 HEATR6 coding CI01000041 null 502300 ~ 526117 (-)