AMCG00005508 (nlk,nlk2,LOC107682651,LOC107756449,LOC107666197)


Basic Information

Item Value
gene id AMCG00005508
gene name nlk,nlk2,LOC107682651,LOC107756449,LOC107666197
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3229689 ~ 3256106 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005508
tgcaGGTCAGTGACAGACCCAAGAGATGGAAAGCGAGTCGCCCTCAAAAAGATGCCTAATGTCTTCCAGAACCTCGTCTCCTGCAAGAGGGTCTTCCGTGAGCTAaagatgctttgtttttttaagcacgACAATgtCCTCTCTGCTCTCGACATTCTGCAGCCTCCGCACATCGACTACTTCGAGGAAATGTATCCTAAATCTGATTGGTTAAAAGTGACCGGTCAACAACGACTTCTGTGTACCAGCCTGGGCTATGGGGCTCTTCAGTGCTATGTGGTAACGGAGCTGATGCAGAGCGACCTTCACAAGATCATCGTGTCCCCACAGCCCCTCAGCTCCGACCACGTCAAAGTCTTTCTTTATCAGATACTCAGAGAGACTCTCCTGGGCCCATTgtcaagtgtttgttttgtcatcaTGCTTGAAAAcATTTGTGACTTTGGCCTGGCCAGGGTCGAGGAGCTGGACGAATCCCGCCACATGACTCAAGAAGTGGTGACTCAGTATTACCGGGCGCCGGAGATCCTCATGGGCAGCCGGCACTACTCCAACGCCATTGACATCTGGTCTGTGGGCTGCATCTTCGCAGAGCTGCTGGGCCGCAGGATCCTCTTCCAGGCGCAGAGCCCCATTCAACAGCTGGATCTGATCACAGACCTGCTGGGAACGCCGTCTCTGGAAGCCATGCGGACGGCCTGTGAAGGTGCTAAGGCTCACATCCTCAGGGGACCCCATAAACAGCCATCTCTTCCTGTCCTGTACACTCTGTCGAGCCAAGCCACCCATGAGGCCGTTCACCTGCTGTGCAGGATGCTGGTGTTTGACCCGTCGAAACGGATCTCGGCAAAGGACGCTCTGGCTCATCCTTACCTGGACGAGGGCCGGCTGCGCTACCACACCTGCATGTGCAAGTGCTGCTACACCACCTCCTCCGGCCGCGTCTACACCAGTGACTTCGAACCCGTCACCAACCCCAAGTTCGACGACAGCTTCGAGAAGAACCTCACCTCCGTGCGGCAGGTCAAAGaGATCATTCACCAGTTCATTCTGGAGCAGCAGAAAGGAAACCGGGTGCCACTCTGCATCAACCCCCAGTCTGCTGCTTTCAAAAGCTTTATCAGCTCCACAGTGGCCCAGCCCTCCGAGATGCCCCCGTCTCCGCTGGTCTGGGAGTAGCTCTGGACGGACACCCGACTACTGAAGGCAGACATCAAAACAACGTAGCATTTCACTGGAGTCTAGGACtagcaattttattttactttctgcagtttttatcatgtgtgtactgtaatTTTACTAATGAAGTTTTAAATGATCAACCA

Function

symbol description
nlk2 Predicted to enable MAP kinase activity. Acts upstream of or within midbrain development; peptidyl-threonine phosphorylation; and positive regulation of Wnt signaling pathway. Predicted to be active in cytoplasm and nucleus. Is expressed in head and midbrain. Orthologous to human NLK (nemo like kinase).
nlk Enables ubiquitin protein ligase binding activity. Involved in protein stabilization and transforming growth factor beta receptor signaling pathway. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in cytoplasm and nucleus.

NR:

description
PREDICTED: serine/threonine-protein kinase NLK isoform X2

GO:

id name namespace
GO:0018107 peptidyl-threonine phosphorylation biological_process
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0030901 midbrain development biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K04468 NLK; nemo like kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005508 True 1328 mRNA 0.53 11 3229689 3256106

Neighbor

gene id symbol gene type direction distance location
AMCG00005507 nlk coding upstream 26929 3201501 ~ 3202760 (+)
AMCG00005506 NA coding upstream 50009 3173579 ~ 3179680 (+)
AMCG00005509 NA coding upstream 57754 3151681 ~ 3171935 (+)
AMCG00005490 sdf2,LOC106602908 coding upstream 333020 2893305 ~ 2896669 (+)
AMCG00005492 NA coding upstream 357816 2866971 ~ 2871873 (+)
AMCG00005499 NA coding downstream 28764 3284870 ~ 3295314 (+)
AMCG00005500 NA coding downstream 48783 3304889 ~ 3306844 (+)
AMCG00005522 NA coding downstream 377627 3633733 ~ 3637811 (+)
AMCG00005526 NA coding downstream 386783 3642889 ~ 3644121 (+)
AMCG00005523 NA coding downstream 392741 3648847 ~ 3652715 (+)
G152656 NA non-coding upstream 29502 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 42701 3183821 ~ 3186988 (+)
G152644 NA non-coding upstream 139034 3071950 ~ 3090655 (+)
G152397 NA non-coding upstream 906344 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1767750 1461724 ~ 1461939 (+)
G152657 NA non-coding downstream 4104 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 467807 3723913 ~ 3761827 (+)
G152866 NA non-coding downstream 1002760 4258866 ~ 4260635 (+)
G152906 NA non-coding downstream 1035924 4292030 ~ 4292882 (+)
G152943 NA non-coding downstream 1276215 4532321 ~ 4534824 (+)
G152588 rpl23a other upstream 380081 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 719013 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 1282889 1929455 ~ 1946800 (+)
G152337 NA other upstream 1425786 1799811 ~ 1803903 (+)
G152267 NA other upstream 1480755 1745960 ~ 1748934 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 10268 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1026411 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1304107 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 1958707 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 3178415 6434521 ~ 6437078 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009324 NA non-coding NC_007126.7 CM002899.2 30300780 ~ 30305800 (-)
grasscarp (Ctenopharyngodon idella) G307665 NA non-coding CI01000093 null 495774 ~ 499206 (-)