AMCG00005537


Basic Information

Item Value
gene id AMCG00005537
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4305625 ~ 4310148 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005537
GAAGATACTAAATGTATAATATCTCAGGCCTCACTGACAGCTTCCAAGACAATACTATACCCGCCATAGCGGATAGGTATGTGTGGATACCAGATACACCGCTCCATTGCAGTGCATTGTGTATAAACGGGAGGACCGGCAGAGGGCgctgtttcttttcctttgtgcGCAGAGGCGGAAGTCGCTCGTTACATTGTTGCAGGAAGCGGACTGACTGCGACTGTGGAGACACGTGTGGACACATTGTGACCGGAGCAGAAGTGTGTCCTGATGACTGGACATGCAACGTCTTCTCCACCCCGGGGAACAGGAATAAACCGGGGAGCGGCGCTGTGTGATAAAGTGCCGATGTTGAGGAAGACCACGGTTAAAAAGGACTGTGCTTCCGAATATTTAGGAGGCAGTCTGTTATTTTAAGCTCTATATCCTGACTGGCAAGGGTGTGAACTGCAGGATAGTTTGACAGATTTGTAATTCCCAGAATGAGCGTGCAGCTGTTGAACCGGACTACTTGCGTTTGCACCCGGGCTCTGAGGAAAGCGAGACTCTGTCTTTCCGAGTCGAACGCTAGCGTCTTCCACTGGACTTCCTACCACAGCTCCGTGACGTGTTCTTCCCCGGTGGGCGATGACCGTGGGGGGCCAGAGCAGGGACCCCTCGGAGGCCTGCGCAGCTCGGGTGAGGCGCGGTGGTCTTACGCCAAGGGCAAGGGGAAGCGGGGGCCGCACGGTCCAGATGGGGCCCTCGGACTCGGAGGCCGTATCTCCAGCGAAGTCCGCAACCTGAGCAAGGAGGACCTCCCCAAGAGGAAGCCCAAGACTCCCCAGCGCGCAAGGGCCGAGGGAGGTGGCAAGGACTCCGAGATCGTGTTCGGCGTGGCGCCCTGTCTGCTGGCTCTCTCCCAGGGCCGGAGGACGATGACGAGGCTGTATGTGAAGAAGGGCCGCGTCCTGCAGAGGGGGGACGTGCAGGAGGTCTACGAGAGAGCCAGGAGGTTGGGCTTGGAGGTGCAGCAGGTGAGCAAGAAGGAGCTGGACCAGATCTGCTCAGGCCGGGTTCACCAGGGCATATGTCTGGAGGCCAGTCCCCTGGGCTACCTCCCCGCAGAGGGGGCTTCAGAACGGGACTGTGTGGATTCTACAGAAACCCCCCTGTGGCTGCTTCTGGATGGGATTCAGGACCCCATGAACCTTGGAGCCATCCTGCGCTCGGCCTATTTCCTGGGGGTGGACCGGATCGCCAGCAGTCTACGGAacagCTGCCCTCTGACCCCGGTTGTGAGCAAGGCCAGTTCAGGGGCGATGGAGGTCATGGGGGTGTACGGATACGAGAGTCCCGCCAACGTGCTAAAGGTGAAACGGGCCCAGGGCTGGCATATCGTTGGCACAGTGGGCGCTGCCAAGGAAGACCCGGGcgtccctgtcctgtcctgttcaGAATACCGGCTGACCAAGCCCACCATTCTCATTCTGGGCAGCGAGGGCGAGGGTCTGTCCCCAGAGCTGCGGGGGCTGTGCCAGGCCCTCCTCACTGTGGCCCCGCGCCGAGCCCTGCACCCTGGCGTGGAGTCCCTCAACGTCTCCGTGGCTGCAGGTATTCTGCTGCACTCTCTGATTTCCAGCCAGCGCGTGAACGAGCGTTGACCACCGTGCTCCCGCCCCCCAGTGCAGTGCTTAAAGACTGGATTACGACATCAATTAGCAATCGGGGCATTGGAGGCTCCTGATTGATTGACTATGCTAATGCAGTgcggcgggggggcgggggggtgagCGCAGTCTCCCGGACCACTGAGCCACGGCCGCTCTGTCGCTCTGGAGACCGGCGGCAGCCAGCGGTTTCCTGGGCAACGGGAGAGCAGCCCAGGCGTCATAAAGAGGCTCGAGtgaaaacacgcacacacatgcaaacacgcacacacatgcacacacacgcacactgacacacacagacatgcacacacacactgacacacacagacacacagacatgcacacgcacactgacacacacagacatagacgcgcacacacaatcacagacacacacaaaccagcGCAAAAGTGGTTTCAATGACAAtagatatttttgtttgctctgGGTTTGCGTTGTTTTTTGTTCGTAGTCCAAATCTGGCCAATCCGATATCTCTGCGAACTTTTTAGTGTCGGCTGTGACTCTAAATCAGAAGTACCACATTAAAGGAGTCTTCTTGCGTCCA

Function

GO: NA

KEGG:

id description
K15507 MRM1, PET56; 21S rRNA (GM2251-2'-O)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005537 True 2221 mRNA 0.58 6 4305625 4310148

Neighbor

gene id symbol gene type direction distance location
AMCG00005534 phf12 coding upstream 25180 4264415 ~ 4280445 (+)
AMCG00005536 NA coding upstream 54777 4240208 ~ 4250848 (+)
AMCG00005535 LOC107690431,LOC107592631,LOC107743685 coding upstream 77935 4219881 ~ 4227690 (+)
AMCG00005567 LOC107718289,LOC105897181 coding upstream 312346 3918356 ~ 3993279 (+)
AMCG00005556 LOC107690467,LOC107718289,LOC107664918,LOC107743726,LOC108425789,LOC107585604 coding upstream 415964 3886333 ~ 3889661 (+)
AMCG00005544 lhx1a,LOC105897175,LOC105023804,LOC106613102,LOC106581220,LOC107685180 coding downstream 169298 4479446 ~ 4490819 (+)
AMCG00005545 LOC103910010 coding downstream 185460 4495608 ~ 4520105 (+)
AMCG00005553 NA coding downstream 294728 4604876 ~ 4615951 (+)
AMCG00005554 NA coding downstream 315965 4626113 ~ 4635255 (+)
AMCG00005577 appbp2 coding downstream 674082 4984230 ~ 5000598 (+)
G152906 NA non-coding upstream 12743 4292030 ~ 4292882 (+)
G152866 NA non-coding upstream 44990 4258866 ~ 4260635 (+)
G152764 NA non-coding upstream 543798 3723913 ~ 3761827 (+)
G152657 NA non-coding upstream 1045196 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 1105438 3199332 ~ 3200187 (+)
G152943 NA non-coding downstream 222173 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 880379 5190527 ~ 5190796 (+)
G153082 NA non-coding downstream 885640 5195788 ~ 5201535 (+)
G153113 NA non-coding downstream 997797 5307945 ~ 5309091 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding downstream 1010912 5321060 ~ 5323923 (+)
AMCG00005538 NA other upstream 469 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 1034781 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 1456017 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 1794949 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 2358825 1929455 ~ 1946800 (+)
AMCG00005546 acaca,LOC107691719 other downstream 250065 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 904665 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 2124373 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 2177570 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 2298495 6608643 ~ 6662480 (+)

Expression


Co-expression Network