AMCG00005545 (LOC103910010)


Basic Information

Item Value
gene id AMCG00005545
gene name LOC103910010
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4495608 ~ 4520105 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005545
ATGGCCGCCTCCATATCACAGGAGCTCGAAGACTTACTGAACCCTTTACCGAAGTTTGCAGACCCTGAAGATGACCAGGATGAAGGGACCAAAGCCAAGGTAATCGAGAAGTTTGACGAGGGGGAACATGAAGACGGAGAGGTGGGCTTCAGCGGGCTGCGCCAGCGGGCCTCGGCGCTCCTGGAGGACACGGACCAGCGCTACCTGGGCAGGGCCACGTCGCGCAAGGAGCTGCGCCTGGAGATGGACGGGTCCGgagaggaggaggatgaattCGACGAGGACGAGGTTCTCTCCGAGGAGGCTGACGAcgaagaggagggggaggacgAAGGAGCTGACGAGGGCTCAGGCAACGAGCATGACCTGGCCCAGATGAAGATCCTGACACAGAAGTTGAAGGGCAGCGACATTATCTTTCCCGAGGAGACGGACTTTCAGAAGCTGACCGAGGGGATGGACGATGTCGGGGAGAGCGAGGAgggggatggagagagtgaggaaGACGACGAATCagatgaggatgaggaagaggaggaaagtGCTGGTACTGacgatgatgaagatgatggaGAGGTTCTGACATTCTCCAAAGAAAAAGTGAGCGAAGAAGTGGAAAAGGGGCAAGCGGTGAAAGCTCAGCTTGTTTTGTGGGATCAGTTGCTGGAAGGACGAATCAAATTGCAGAAGGCTCTCCTGACAGCCAATCAGCTGCCACAGCCGCAGACCTTCCCGCTGTTCAAAAAGAGAGGCGGGACGGAGTTTGCCGGAGCCCTGAAGAATAGCCACAAGGCTCTGAAGGCGCTGCAGAGGTCCCTGATGGAGCTACAGGACCAGCTGCTCTACCAAAATCCCGACACCAGAGCCGTTGTCCAGGGCAAGACGGGCACAAAACACAGTGAGGATGAGGAGATACCCAGTGACGAAGAGGAGGCaatggaagaggaggaggaggaggaggaggagaagaaggagaaggtggACAGGAGAGGACCACCCAAACGCAAGCTGGAGATGGAGGAGTACCCTGACTTCATGGCTAAACGCTTTGCCGGTTTCCAACCATACCGCGATGCCACGCTGCAGAAGTGGCACGACAAGACCCGGCTGACGATGGGCAAGATTGGCAAGGGTTTCCAAGCGTTCGAGAGGAACATCCTGACGCAGGTAGAGCAGGTGCTGACGGACAAGGAGCGGCTGATGCGACGTACACGCACCCGGCGGACCGAGTACAGGGTGCTGGGCCAGCCCCACCCCGGCGCCGCCCCGGCCACCGGGACCACAGCACCGACACAGGAGGAGCAGCCACTCAAACCCAACGCACACCTCAAAGACCTGGATGAGGAGATCTTTGACGACGACGATTTTTATCATCAGCTCCTCCGAGAGCTCATCGAACGCAAGACCAGCGCCGCGGACCCCAATGATCAGGTGGCCATGGGCAGGCAGTGGCTGGCCATTCAGAAGCTACGCAGCAAGATCAAGAGGAGGGTGGACACCAAGGCCAGCAAAGGCCGGAAAGTCAGGTTCCACGTGCACAGCAAGCTCGTGAATTTCATGGCACCTATTGACCACAGCGCCATGAATGATGACGCCCGGTAA

Function

NR:

description
protein AATF-like

GO: NA

KEGG:

id description
K14782 AATF, BFR2; protein AATF/BFR2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005545 True 1602 mRNA 0.58 11 4495608 4520105

Neighbor

gene id symbol gene type direction distance location
AMCG00005544 lhx1a,LOC105897175,LOC105023804,LOC106613102,LOC106581220,LOC107685180 coding upstream 4789 4479446 ~ 4490819 (+)
AMCG00005537 NA coding upstream 185460 4305625 ~ 4310148 (+)
AMCG00005534 phf12 coding upstream 215163 4264415 ~ 4280445 (+)
AMCG00005536 NA coding upstream 244760 4240208 ~ 4250848 (+)
AMCG00005535 LOC107690431,LOC107592631,LOC107743685 coding upstream 267918 4219881 ~ 4227690 (+)
AMCG00005553 NA coding downstream 84771 4604876 ~ 4615951 (+)
AMCG00005554 NA coding downstream 106008 4626113 ~ 4635255 (+)
AMCG00005577 appbp2 coding downstream 464125 4984230 ~ 5000598 (+)
AMCG00005580 usp32,LOC107585566,LOC108425843 coding downstream 502166 5022271 ~ 5067746 (+)
AMCG00005578 NA coding downstream 552021 5072126 ~ 5079503 (+)
G152906 NA non-coding upstream 202726 4292030 ~ 4292882 (+)
G152866 NA non-coding upstream 234973 4258866 ~ 4260635 (+)
G152764 NA non-coding upstream 733781 3723913 ~ 3761827 (+)
G152657 NA non-coding upstream 1235179 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 1295421 3199332 ~ 3200187 (+)
G152943 NA non-coding downstream 12216 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 670422 5190527 ~ 5190796 (+)
G153082 NA non-coding downstream 675683 5195788 ~ 5201535 (+)
G153113 NA non-coding downstream 787840 5307945 ~ 5309091 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding downstream 800955 5321060 ~ 5323923 (+)
AMCG00005538 NA other upstream 190452 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 1224764 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 1646000 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 1984932 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 2548808 1929455 ~ 1946800 (+)
AMCG00005546 acaca,LOC107691719 other downstream 40108 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 694708 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 1914416 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 1967613 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 2088538 6608643 ~ 6662480 (+)

Expression


Co-expression Network