AMCG00005569 (sgsm2,LOC108277483,LOC107729122)


Basic Information

Item Value
gene id AMCG00005569
gene name sgsm2,LOC108277483,LOC107729122
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5127087 ~ 5142596 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005569
ATGTCGGAGGATAAGTTTGCGGTGTCTGCGCGGGAGTACGTGGAGTCGCTGCACCAGAATTCGCGCACGCACCTTCTGTACGGCAAGAACAACGTGCTGGTTCAGCCGAAGGAAGACATGGAGGTGCTGCGGGGCTACCTGTCTCTGCACCAGGCTGGAGACAACCTCACCCTGAAGTGGACGCCCAACCAGCTGATCAACGGCACCCTGGGACAATGCGACATGGAGAAGAGTATTTACTGGGACTATGCCCTGACCGTGCCTTTACGACAGATCGTCTGCATCCACTGTCACCAGCGCCCGGACTGTGGTGGGATTCTGGTGCTGGTGAGCCAGGATGGCATCCAGCGGCCTCCACTGCACTTCCCCCCGGGGGGCCACCTACTGGCCTTCCTGTCCTGCTTGGAGAATGGACTGCTACCCCGGGGGCAGCTGGAGCCCCCACTCTGGTCCCAGCGAGGCAAGgGCAAGGTGTTTCCCAAGCTGCGGAGAAGGAACAGCACGGCCAGACTGGGTGAGCCCCGGGAAGTAGGGGGCGAGGAGGAGATTGCCTCAGACTATGTTTTTCGGATCGTTTACCCCGGCCACCGGCACGACTCCAACTCCGGGGAGATGATCGAGATGCAGGGCTTCGGTGGCAGTCCGCTCTCCTGGCAGCAGGGTGAGTCCGGCAGTCACGTGTCGTCCTGTCTATCCTGCTCCACCGGGGGCAGCAGCCCGTACGAGCTCGCCGCCGGCTGCACCTGCATCCATGACCGGATCCCTCTGAAGATGCTGTGTCAGAACATGAAGAAGCAGATCGTGTCTAGGGCTTTCTACGGCTGGTTGGCCTATTGCCGGCACCTGTCCACAGTGCGGACGCATCTGTCGGCGCTGGTCAACCACAACATCGTCCCCCCGGACAAGCCCTGCGAGGCCTCGGGGGGGCTGAGCAAAGACGTGTGGAGCAAGTACCAGAAGGACTGCAAGaACTACAaggagctggagctgctgcGGCTGGTCTACTATGGGGGGGTGGAGCACCAGATCCGAAAGGAAGTGTGGCCCTTCCTGCTGGGACACTACAAGTTTGGCATGGGCAAGAAGGAGATGAACCAGATTGATGAAAAGATTGCAGCCAAGTACCAGCAGGTGATGTCGGAGTGGAAGGCGTGTGAGGTGATTGTGAGGCAGCGGGAGAAGGAGACGCACTCCGCCATCTTTGCCAAGCTGTCGTCGGGCAGTAGTATAGACAGCCATGTGCAGAGGCTCATCCACCGGGACTCCACCATCAGCAATGAGGTCTTCATGTCGGTGGACGAGCTGGacagtggggggagggggctgccTGGCCCTGAGGACGGTGCCCCGACCCTGACCACTGTGGGCACCCCCGTGGCTCTGGCACCAGATGAGAGGCCCGCCGTGGAGTTTGACTCCCCGGACTCGGGTCTCCCGTCCTCGCGGAACTACTCGGTAGCGTCCGGTCACTCGCAGATCCTGTCCAGCATCGAGGACGCTCAGagcatggaggaggagctgggcGAGGACGGGAGGCAGAGCAAAACGCGGCAGGACTCGATGACTGAGGAGCAGCTCTGTAGCCAGCTGGACAAGCTGATGacaggggcggggggggcacCCATCTCCTTCGCTTCATACACGATCGAGCTGCTGGATACGGTGGCCCTCAACCTGCACAGGATAGACAAGGACGTCCAGCGCTGTGACCgcaactactactacttcaCCCCGGGTAACCTGGAGAAGCTGCGCAACATCATGTGCAGTTATGTCTGGGAGCACCTGGAGATGGGCTACGTCCAGGGGATGTGTGACCTGCTGGCCCCACTGATGGTCATTCTGGACGATGAATGGTTGGCGTACAGCTGTTTCACCCAGTTGATGAAGAGGATGAGCCAGAACTTCCCCAATGGAGGAGCCATGGACACTCATTTTGCCAACATGCGCTCCCtgatccagATTCTGGACTCTGAATTGTTCGAGCTCATGCACCAGAATGGGGATTACACCCACTTCTACTTCTGCTATCGCTGGTTCCTCCTGGATTTCAAACGAGaACTGCTGTACGAGGACGTGTTTGCCATGTGGGAGGTGATCTGGGTTGCGAGACACATCTCCTCCGAGCACTTCGTCCTGTTCATCGCGCTGGCCCTGGTCGAGGTCTACAGGGAGATCATCCGAGACAACAACATGGACTTCACCGACATCATCAAATTCTTCAACGAAATGGCCGAGCGCCACGACGTGCAGCACATTCTGCGGATAGCCAGGGAGCTCGTGCACAAAGTACAGACTCTCATCGAAAACAAGTGAGctaggagaggagaggaggatgggggGAGGAGGGCGGACAGCTGACTCTCACTGTGAGGCCCCTAGAGGCACAGCCGGAGGGGCCCTAAAACGCAGGACAGAGACCCCGGATACCCCCCATAGCCCTTCTGAGCTCTCTTGCACCGACTTCTCCCAGGAACTCCGACAGCTTCCTCCGAGAGACCCCCTTCTCCAAACAACCCTCTCCACGACAGGAACAGGAAAGACGGCACGCCAAACATCCTTCCGTTTCAGAACCTGAGGTGGGTGTGTGAGGGTGGAGGGGTTGATAAGTCCAGGAAGGAGTTCACCTGTGTTGGTCTGTCTGAGTCTTACTGGGACATTTCGTGAGAATAACCACATTGGAGTTTTCTTACGCGTCCGTGAGCGAGCTCCCACTGTGACCAGGCTTAAATgctggagaaaaacacaaaacaaaaacaccccacacacacacacacacacacacacacacacacacacacgtgcgtGCATGCAGACATTTATGAGATCGTTCTAGAATGTTTTTAGTGATGCCTGATTAATATCACTCTTGCTGCCTATATCTTAAGTTCACACTGTACTTTTCCATTACAAGCCGGCcagtttttgtggttgtttgtgtgtgttttgcatgcAGCAGAGCCCAAATTCTGCATAAGGGTTTGTTCTAAGAATGAGATGATCTGTGTTTTCGTTCCCACAGCGTGTCTGTAGAAGTGTTGTCTTCTCTGAGCTGCACTACTTTACTTTTACTTCACTGCCCTATCTGCCTTAGCACGGGTGACCTGTCTCTAATCTTACGGCGGTGACTGCCACGATTCACGTACACAACAGTATACATTAACTCTGTGACCAAAAGAACTGTGCCATTTCCGGAACtgttaattttatgtatttataatagaCACATTTTAAGGGATTCTTAGGTTCTTAGATTCTTTAATAGTCTTTCTATGATTGTGTAGAATCTATTTGTGAAGGAAAGGATTTGcttcttatttatttgcacaattGGCACTTTTCTCagcatgtttaaaaagaaaaatccatctGTTGTCATTTTGTCAGCCTGCTTCACGAGGTTCGAAGCAGGTTGCACAAGAATCGGTACCCAGCTTGAACAGGGTCAACTCCTTCCTGAGATAGTGACTGCTGAACAGCTGGGAGGCTTTGGCACCCAAGTGTGTGGCGTAGTCTGACACATGGGGCATCTCCCCTTTAGTGACCAAGGCTTCAGCTGTAATGGGTAATTACTCTGGGTCTTCTTTAACCATATGGTGGTGCAAAATAAAACGGTCAGGACTCGGGGAGGGAGGAGGCAATATAAAATGCtccagagaaacagacagaaaatcTCCGCATTGCAGTTGCAGACGACACTAATATGTCAAACCTGCCGCACTGATCCTAGCTGTGGGTTCTGCCCGTGTCATATGCAGAATTATACCCAGTTGTCACCTCTCTTTAACTTTGAGAAAGTATTGCAACTGACTGTCGACCAACAATGGAGAAATAATTCCCTCTGCCTGGCAACAACACAATCAGGACaatttttagtgttttgtatttattcatgttttaatgtagcACATGATATTActggcagatttgtttttagaaactGTATATATTAGTCAATTGCaaagtgctttgttttaattgtaggACAATGGGTGCCATTTGAATAACTGCTGTATTAACCAAATGTGTGACAgagtactgtatttaaaatatatttgtaagatGGGGATTGCCAGAagtgatagatagataaataaataaatacacctaaAAGCTATAACTTTAATAGATAATagactttgcaggtgtgacatggtaaagggaagctatagattgaagcTACTGGAAACATCTAGCGCATCCAGCACgcattcattcatccatttaaAAGTTGTTAGTGCCTTTGCAAGGTGTCAAAGCATGAAGGTAAATTGCATAATAAAATTAAGAACAACACGAGCTCTGTATCTCAGAGTAAACTAGGCCACTTCTTTGTTAACAATAAATTCAACCAGCAGGCCCTTTAGTAATGTAATGGGTTCAGATATCAAATGCAGGCAATATGTTTCGTGTGTTAATTGACTGAATTAGTTGAAACGGACATGGGAAATGTTTACACTGACTCTACACAGATCTACACAACACTATAGCAGAGTTTTCTCCCTGGACTGACCCGTGCCAAATCCAAATCTCCTTCCAAAGCAATCTTTCCCTTACTGAGGTTGGGAAGTTGAACTTAGCCTTAgtctgcagtgtctgtgaaatggCAAACAGCACATGTCCAAAGTCTTTCCATttacgataataataatacaaattcctGTGAGAATTTGAATCGCAGTTTTGACAGACAGTAGTTAACCATAAGTATTCAATACAGCAAAATTACTGTGTAATCACTAGTCACATTAATGAATAGAAATAAAccactataattattattattggagtGTTATCTGTATTACTCTATTTCTCAAGAGCCTGTGTTTTACCCAAAGTCCTCTCCGTCACCGTCCACCTGTGTCCCAAAGCCTCCCACAAGGTCACACTCCCACTAGCTGATAGAGATGTGCAATTTCGAACCACGTCTCAAAAAAGACTGTTCACACGGGATCTTTACTCTGACATGCTCCTTTCATTTGTATGgttattttattctctctctcgccctctctGAAGTAGAGAGTGCGAGTCTAAGGTTTCTATGGGGCCTGTACTGTTTTATTTCCACCTTTGTTTCGGTTGGTTGGTTTGGAAGGCCTGATGTCTTCTATCCTACTAGATGTGTACAGCTTTCAAAGTGGGAAATGTTTGTTACATGTCAATTGTTGTGCTCTTTATGAATGTTGTGCActgaatttgttttgatttttttttaatctattttatttggAAACCAACATTTGAATgataatttatgtattgttaaaggatgtattatttatcttgaaTGTAACATTACAATAAAAGGGAT

Function

symbol description
sgsm2 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human SGSM2 (small G protein signaling modulator 2).

NR:

description
PREDICTED: small G protein signaling modulator 2 isoform X3

GO: NA

KEGG:

id description
K21851 SGSM2, RUTBC1; small G protein signaling modulator 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005569 True 5314 mRNA 0.49 17 5127087 5142596

Neighbor

gene id symbol gene type direction distance location
AMCG00005571 sgsm2,LOC106581519 coding upstream 114 5121930 ~ 5126973 (+)
AMCG00005570 tnfaip1 coding upstream 36229 5087506 ~ 5090858 (+)
AMCG00005579 NA coding upstream 45067 5080135 ~ 5082020 (+)
AMCG00005578 NA coding upstream 47584 5072126 ~ 5079503 (+)
AMCG00005580 usp32,LOC107585566,LOC108425843 coding upstream 59341 5022271 ~ 5067746 (+)
AMCG00005585 NA coding downstream 66204 5208800 ~ 5211337 (+)
AMCG00005584 nup88,LOC106603451,LOC106567676 coding downstream 127801 5270397 ~ 5278525 (+)
AMCG00005612 NA coding downstream 167674 5310270 ~ 5311298 (+)
AMCG00005615 NA coding downstream 183091 5325687 ~ 5339731 (+)
AMCG00005614 ruvbl2,LOC105888489,LOC107664527 coding downstream 206235 5348831 ~ 5355701 (+)
G152943 NA non-coding upstream 592263 4532321 ~ 4534824 (+)
G152906 NA non-coding upstream 834205 4292030 ~ 4292882 (+)
G152866 NA non-coding upstream 866452 4258866 ~ 4260635 (+)
G152764 NA non-coding upstream 1365260 3723913 ~ 3761827 (+)
G152657 NA non-coding upstream 1866658 3260210 ~ 3260429 (+)
G153080 NA non-coding downstream 47931 5190527 ~ 5190796 (+)
G153082 NA non-coding downstream 53192 5195788 ~ 5201535 (+)
G153113 NA non-coding downstream 165349 5307945 ~ 5309091 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding downstream 178464 5321060 ~ 5323923 (+)
G153154 LOC106602867,LOC107597455 non-coding downstream 301783 5444379 ~ 5445257 (+)
AMCG00005546 acaca,LOC107691719 other upstream 564067 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 821931 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 1856243 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 2277479 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 2616411 2503910 ~ 2510676 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 72217 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 1291925 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 1345122 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 1466047 6608643 ~ 6662480 (+)
G153675 NA other downstream 2118081 7260677 ~ 7265971 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location