AMCG00005571 (sgsm2,LOC106581519)


Basic Information

Item Value
gene id AMCG00005571
gene name sgsm2,LOC106581519
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5121930 ~ 5126973 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005571
acAGTGGAGGTCTGTCTGCTCCACATGTTGAAGCGGCGAGCGGCTGGCTTCCTCCGCAGTGACAAGATCGCCGCGCTCTTCACCAAGATCGGCAAGGTGTACGACACAGCTGGAGAGGTGTGCAAGAAGGTGCAGGAGCAGCTGCAACAGCAGACCGAGGCCACCAGGAGGGCTCAGTCCAGTGGCCAGGAGTCTCTGAAGAGGCAGAACTCGACAGCAGGCCGCCCCCCGCAGCCCCTCACCCCCCAGGCCATTAAACACATCTGGGTTCGGACTGCGCTCTTTGAGAAGGTGCTGGACAAGATCGTGCAGTACATCGTGGACAACTCCAGtaAGTACTACGAGAAGGAGGCTCTGATGCACGATGCCGTCTTCGGGCCCATTCTGGCTGCTTTACTCGTGGGGCCGTGCGCTCTGGAGTACACCAAGCTGAAGACCTCTGATCATTTCTGGACCGACCCCTCGGCCAATGAGCTCGTGCAGCGCCACCGAATCCATGGCGCCACCAGCCGCCAGGACTCCTCGCCCTCCCGCCGACCTGCCCTGGGGGTGAGGAGGACCAACAGCTTTGGGGAGGGAGGGGCTGGGATAAGGGTGAGAGTTGAGGAGGGCAGTACACAGTATCACCTAATTTACTTCAGTTGGCGTCACAGCAGTTTGGTGCTATGA

Function

symbol description
sgsm2 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human SGSM2 (small G protein signaling modulator 2).

NR:

description
PREDICTED: small G protein signaling modulator 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005571 True 669 mRNA 0.60 4 5121930 5126973

Neighbor

gene id symbol gene type direction distance location
AMCG00005570 tnfaip1 coding upstream 31072 5087506 ~ 5090858 (+)
AMCG00005579 NA coding upstream 39910 5080135 ~ 5082020 (+)
AMCG00005578 NA coding upstream 42427 5072126 ~ 5079503 (+)
AMCG00005580 usp32,LOC107585566,LOC108425843 coding upstream 54184 5022271 ~ 5067746 (+)
AMCG00005577 appbp2 coding upstream 121332 4984230 ~ 5000598 (+)
AMCG00005569 sgsm2,LOC108277483,LOC107729122 coding downstream 114 5127087 ~ 5142596 (+)
AMCG00005585 NA coding downstream 81827 5208800 ~ 5211337 (+)
AMCG00005584 nup88,LOC106603451,LOC106567676 coding downstream 143424 5270397 ~ 5278525 (+)
AMCG00005612 NA coding downstream 183297 5310270 ~ 5311298 (+)
AMCG00005615 NA coding downstream 198714 5325687 ~ 5339731 (+)
G152943 NA non-coding upstream 587106 4532321 ~ 4534824 (+)
G152906 NA non-coding upstream 829048 4292030 ~ 4292882 (+)
G152866 NA non-coding upstream 861295 4258866 ~ 4260635 (+)
G152764 NA non-coding upstream 1360103 3723913 ~ 3761827 (+)
G152657 NA non-coding upstream 1861501 3260210 ~ 3260429 (+)
G153080 NA non-coding downstream 63554 5190527 ~ 5190796 (+)
G153082 NA non-coding downstream 68815 5195788 ~ 5201535 (+)
G153113 NA non-coding downstream 180972 5307945 ~ 5309091 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding downstream 194087 5321060 ~ 5323923 (+)
G153154 LOC106602867,LOC107597455 non-coding downstream 317406 5444379 ~ 5445257 (+)
AMCG00005546 acaca,LOC107691719 other upstream 558910 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 816774 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 1851086 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 2272322 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 2611254 2503910 ~ 2510676 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 87840 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 1307548 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 1360745 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 1481670 6608643 ~ 6662480 (+)
G153675 NA other downstream 2133704 7260677 ~ 7265971 (+)

Expression


Co-expression Network