AMCG00005579


Basic Information

Item Value
gene id AMCG00005579
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5080135 ~ 5082020 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005579
ATGTCTGCTCTCCGCTTGCTCGAgtggctgtttttcttttatttcgcCTCTCATATCCCCATCACTCTTTTCATTGACTTGCAGGCTCTGCTGCCGGCCGAGATCTACCCCCAGACTGTGAGAGGCCGCCGCTGGATCCGCATCCCTGCCATCATCTACTCCGTCCACGTGGCGACCACCCTGATCCCCATCCTcacccacatcctgttccaccGCTTCCCCGGGACGCCCCACCCCGGCCCCCAGACCCCCTCCGAGCGGCTGGCGCTGCTGGGCATCTACTCCCCGTACCTCCTCGtgcccctcctcctcctgctcacCATGCTGCTCAGCTCCAGCTACAGAGGCGAAGCCCGGCCTGGGAAAGCGACGGCGAGTCAGAAGAAGAGCAGATAA

Function

GO:

id name namespace
GO:0003997 acyl-CoA oxidase activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko04146 Peroxisome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005579 True 396 mRNA 0.62 2 5080135 5082020

Neighbor

gene id symbol gene type direction distance location
AMCG00005578 NA coding upstream 632 5072126 ~ 5079503 (+)
AMCG00005580 usp32,LOC107585566,LOC108425843 coding upstream 12389 5022271 ~ 5067746 (+)
AMCG00005577 appbp2 coding upstream 79537 4984230 ~ 5000598 (+)
AMCG00005554 NA coding upstream 444880 4626113 ~ 4635255 (+)
AMCG00005553 NA coding upstream 464184 4604876 ~ 4615951 (+)
AMCG00005570 tnfaip1 coding downstream 5486 5087506 ~ 5090858 (+)
AMCG00005571 sgsm2,LOC106581519 coding downstream 39910 5121930 ~ 5126973 (+)
AMCG00005569 sgsm2,LOC108277483,LOC107729122 coding downstream 45067 5127087 ~ 5142596 (+)
AMCG00005585 NA coding downstream 126780 5208800 ~ 5211337 (+)
AMCG00005584 nup88,LOC106603451,LOC106567676 coding downstream 188377 5270397 ~ 5278525 (+)
G152943 NA non-coding upstream 545311 4532321 ~ 4534824 (+)
G152906 NA non-coding upstream 787253 4292030 ~ 4292882 (+)
G152866 NA non-coding upstream 819500 4258866 ~ 4260635 (+)
G152764 NA non-coding upstream 1318308 3723913 ~ 3761827 (+)
G152657 NA non-coding upstream 1819706 3260210 ~ 3260429 (+)
G153080 NA non-coding downstream 108507 5190527 ~ 5190796 (+)
G153082 NA non-coding downstream 113768 5195788 ~ 5201535 (+)
G153113 NA non-coding downstream 225925 5307945 ~ 5309091 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding downstream 239040 5321060 ~ 5323923 (+)
G153154 LOC106602867,LOC107597455 non-coding downstream 362359 5444379 ~ 5445257 (+)
AMCG00005546 acaca,LOC107691719 other upstream 517115 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 774979 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 1809291 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 2230527 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 2569459 2503910 ~ 2510676 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 132793 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 1352501 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 1405698 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 1526623 6608643 ~ 6662480 (+)
G153675 NA other downstream 2178657 7260677 ~ 7265971 (+)

Expression


Co-expression Network