AMCG00005585


Basic Information

Item Value
gene id AMCG00005585
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5208800 ~ 5211337 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005585
ATCCCCTCAGTGAACTACACTCCTGAGGTAACCACCTACAATCTGACGGGCAGGGTCACTGCTACAACCCTCCTTCTGAATCAGCCACTGTGCTTCTTCGACAACCTAAAGGGGCTGCCCTGCACCACAGACACCTGCGAAATATGGCTGTCTGTGGCCAGAGGAGCAGGGGTCCAGAATTTTGATGTAGACATGGTCTCCTTTGGGTCTGCAATCCTCAGCACATCTCCCTATCCCAGCGCTTTCATCAGTGAGCAGAACAAGAGCTACTACATCACCCGTCTTGGCATTCAGAACCGCTTCCCCTGTGCCAAGCTCCCTGGCATCCGCTACTTCCGGGTGGGAGACGAGGGCAACTGCACCACCACCAACTGCAATGGAGTGTTGCCCGTCGGCTCAACTGTCAGAGTGAAGTATCTTCTCGTTGATCCAGTGAGCAGAAGGGTGTCCTATGAATCCATGTGGTCCCAGCCCATCAGTCTCATAACACCCAAGCCGAGCGCCTCCATTGACGAGTGGATTGGGAAACGCTCAGGGGGCATGGTTGTCGTCACAGCCATCGCTTCCTGCCTGCTggccctcctgctgctgctggtgattGGCAATCTGCTGAGGGAGTGCTCAGCTTTGGTCACAGGGCGGTATGACATCACAGCCTGCAGTGCCAGACATCCACACCCCTCTGCCAGTGCGCCCCATCTCGTC

Function

GO:

id name namespace
GO:0072046 establishment of planar polarity involved in nephron morphogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005585 True 705 mRNA 0.56 5 5208800 5211337

Neighbor

gene id symbol gene type direction distance location
AMCG00005569 sgsm2,LOC108277483,LOC107729122 coding upstream 66204 5127087 ~ 5142596 (+)
AMCG00005571 sgsm2,LOC106581519 coding upstream 81827 5121930 ~ 5126973 (+)
AMCG00005570 tnfaip1 coding upstream 117942 5087506 ~ 5090858 (+)
AMCG00005579 NA coding upstream 126780 5080135 ~ 5082020 (+)
AMCG00005578 NA coding upstream 129297 5072126 ~ 5079503 (+)
AMCG00005584 nup88,LOC106603451,LOC106567676 coding downstream 59060 5270397 ~ 5278525 (+)
AMCG00005612 NA coding downstream 98933 5310270 ~ 5311298 (+)
AMCG00005615 NA coding downstream 114350 5325687 ~ 5339731 (+)
AMCG00005614 ruvbl2,LOC105888489,LOC107664527 coding downstream 137494 5348831 ~ 5355701 (+)
AMCG00005613 NA coding downstream 144866 5356203 ~ 5360923 (+)
G153082 NA non-coding upstream 7265 5195788 ~ 5201535 (+)
G153080 NA non-coding upstream 18004 5190527 ~ 5190796 (+)
G152943 NA non-coding upstream 673976 4532321 ~ 4534824 (+)
G152906 NA non-coding upstream 915918 4292030 ~ 4292882 (+)
G152866 NA non-coding upstream 948165 4258866 ~ 4260635 (+)
G153113 NA non-coding downstream 96608 5307945 ~ 5309091 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding downstream 109723 5321060 ~ 5323923 (+)
G153154 LOC106602867,LOC107597455 non-coding downstream 233042 5444379 ~ 5445257 (+)
G153271 NA non-coding downstream 589311 5800648 ~ 5800892 (+)
G153274 NA non-coding downstream 705498 5916835 ~ 5955451 (+)
AMCG00005546 acaca,LOC107691719 other upstream 645780 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 903644 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 1937956 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 2359192 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 2698124 2503910 ~ 2510676 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 3476 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 1223184 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 1276381 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 1397306 6608643 ~ 6662480 (+)
G153675 NA other downstream 2049340 7260677 ~ 7265971 (+)

Expression


Co-expression Network