AMCG00005591 (atp2a3)


Basic Information

Item Value
gene id AMCG00005591
gene name atp2a3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5595171 ~ 5604521 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005591
AAGTCCCTGTGGGAGCTGGTGGTGGAGCAGTTTGAAGATCTCCTGGTGAGGATCCTTCTGCTCGCAGCCTGCATCTCCTTTgtGCTGGCGCTGTTTGAGGAGGGCGAGGAGACGACCACGGCCTTCGTTGAACCCATTGTCATCCTCCTCATTCTCATCGCCAACGCTGTGATTGGAGTATGGCAGGAGAGGAACGCAGAGAGCGCGATCGAAGCTCTAAAGGAGTACGAGCCCGAGATGGGCAAGGTGTTCCGGATGAACAGGAAGGCCGTCCAGAGGATCAAGGCTCGGGAGATCGTGCCTGGAGACATCGTGGAGGTGGCG

Function

symbol description
atp2a3 Predicted to enable P-type calcium transporter activity. Predicted to be involved in calcium ion transmembrane transport and cellular calcium ion homeostasis. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane and sarcoplasmic reticulum. Predicted to be active in sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in Purkinje cell. Orthologous to human ATP2A3 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3).

NR:

description
PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 3

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005591 True 324 mRNA 0.58 3 5595171 5604521

Neighbor

gene id symbol gene type direction distance location
AMCG00005593 NA coding upstream 1989 5577417 ~ 5593182 (+)
AMCG00005622 zzef1,LOC107598082 coding upstream 48142 5514040 ~ 5547029 (+)
AMCG00005623 ankfy1 coding upstream 87021 5493184 ~ 5508150 (+)
AMCG00005621 UBE2G1,ube2g1a,ube2g1,LOC107597432 coding upstream 105601 5479508 ~ 5489570 (+)
AMCG00005624 NA coding upstream 119524 5466148 ~ 5475647 (+)
AMCG00005592 atp2a3,LOC106567410 coding downstream 8123 5612644 ~ 5617109 (+)
AMCG00005590 atp2a3,LOC102312511 coding downstream 22185 5626706 ~ 5639936 (+)
AMCG00005589 NA coding downstream 43940 5648461 ~ 5666868 (+)
AMCG00005603 dhx33 coding downstream 133269 5737790 ~ 5744821 (+)
AMCG00005602 NA coding downstream 140936 5745457 ~ 5747836 (+)
G153154 LOC106602867,LOC107597455 non-coding upstream 149914 5444379 ~ 5445257 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding upstream 271248 5321060 ~ 5323923 (+)
G153113 NA non-coding upstream 286080 5307945 ~ 5309091 (+)
G153082 NA non-coding upstream 393636 5195788 ~ 5201535 (+)
G153080 NA non-coding upstream 404375 5190527 ~ 5190796 (+)
G153271 NA non-coding downstream 196127 5800648 ~ 5800892 (+)
G153274 NA non-coding downstream 312314 5916835 ~ 5955451 (+)
G153312 NA non-coding downstream 443609 6048130 ~ 6048438 (+)
G153348 LOC107090330,LOC102220786 non-coding downstream 627638 6232159 ~ 6234047 (+)
G153381 NA non-coding downstream 678467 6282988 ~ 6331371 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 353395 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1032151 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 1290015 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 2324327 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 2745563 2845217 ~ 2849608 (+)
AMCG00005647 NA other downstream 830000 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 883197 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 1004122 6608643 ~ 6662480 (+)
G153675 NA other downstream 1656156 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 1702537 7307058 ~ 7334571 (+)

Expression


Co-expression Network