AMCG00005597


Basic Information

Item Value
gene id AMCG00005597
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6151299 ~ 6155374 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005597
ATGCTTGTTgtgctctctccccctctctcatcTCAGGCTCGGCTGGCGCTGAACCGAGGGGCCAAGGCGGTCATTTTTGATGTGACAGACAACTCCAAAGCAGCAGAGGAGCTGTTGGAGTCGGACTACCTGTCCCACCCCGTGGTCTTGGTCCAAGCTCAGGCGGCCGAGTACCTGATGGGGCTGGTCAACAGGAATGAGGAGGCCACGGTCCGCATCGAGGTCCACATCGAGCAGAGCACGGTACGTCACCGCGTGGAAGGACCATTCCCCGTCTCCCTTTGTGCAGCCTGGGCAACCCACAACTATGACGTGGGGATCCTGCTCACCGTGGTGATGGCCATGTTGGTGATCATCATGATTTTCGCTTTCCGATTCAAGTGCAGACAGACCAGGAACCGGGACTCCATGCACCTGCAGACGGTGCGTGCGATCAACCGGTTGGAGACGCGGACGTACAAATCCCAGGGCCGCTCTGGGAGTCAAAGGTCAAGAGGAGGAAGGGACTCTGGTAGCAGCAGCAACTCCAGTCCCGTGTGTGCGATCTGTCTCGAGGAGTTCCTGGACGGACAGgaTTTGCGCATCATTTCTTGCTCTCATGAATTCCACAAGGAGTGTGTGGACCCCTGGCTGCTGCAGCACCGCACCTGCCCCCTCTGCATGCACAACATCATGGAAACTGACGCCGCCCCACAGCCGGCGCACCATGGCCGGCACCAGCAGAGTGTGGAGCCCAACCAGAGGTTCCTGCTCCTCCACCCCTACCCCCGACACCCCCCTCTCCACCAGCACCCCATCGCCATTCCCATCCGCCACTACCCCAGGGCCCCAGGTGGGCCGTTCCCACAGCTGGGCCGCTACGGCACCTCACCACGTTTGGACCACAGAGCCATGCGCTTCCCACCCGGCCGCCAGCTGGGCATGGCCCTGGGGTGCACTTACCACCGGAACGAGGGGCACCCGGGGCGCCATCACAGGACTAACACACTCTGCCATCCCTCTGCCCATTTTCCCCACCGGCCCTGCCCCCCACCATACCACCCCGTCCCCAGCTCCTGCCTCCATGTGGCCCCGGGCAGTGGTGGTGCCCCGGGCCGGCAGGACGACGGCAGCTGTTCGGGCGGCAGCTACAGGACAGAACGTAGCGGCTACCTGGCAGACGGGCCCGCCAGCGACTCCAGCTCGGGCCCCTGCCACGGCTCCTCCAGCGACTCCGTGCTCAACTGCACCGACGTCAGCCTGCAGGGCGTCTACGGCAGCTGGTCGACCTTCCGCAGCTCCCTGAGCAGCGACTACGACCCCTTTGTGTACTGCGGGCCGGGCCGGGGCCCTGGGGGCGGGGGCGGCCTGGACAGCGGGTCGAGGCCCAGGTCCCTGGACTCTGTGGTGAACCGGACGTGCCCGGAGGAGCAGGTGTTCAGCCACGTACACTATCACCGGCACCGGCACCATCACTACGACGACGGGGACCACAGTCAGGGTCCGGACAGGGGGTCCGACGAGGAGTTCGGCCCCGTGGCGGCTCCTGTCTGGGACAGCCCTGAGGCAGAGCCGTGCCAGTGCCCCCGAGCTGGTGACCCTCTGGACAGGTTGCCACACAGGGAGGTGGAGCCGGAGACCGAGCCGGCCAACCCCTCCCCGGGCGTGGCCTTGCTCCCTCCGCCACAGCCCCCGCCGCCCTGCTGTCACCACGGGCCCGGCCGCCACCATCGCCACCCCCACCGCCAGAAAAAGGGCAGCTGTGTGCTCGAGACTCCTGCCGTGCACTTTCACCAGAGCCTGGACCTTCAGGAGGACTGCAGCATCCACATCCACTACGGGCAGAGCTCTGGGTACTGCTGCTCCCCGGACATCCCCGCCGTGCTGCCCGTGCCGCTGGTCCTGGACTCCACCAGCTCCGCCGACTGGCCCTGCTGCTCCGGGGCCCACGTGGTGTGGCAGCGGCAGCCGCAGCTGACGGCATCAGAGCCACAGCTCCCGGGACCAGGGGCCCCGGCGCAGAGGCCGTGCGGGAGAGGGCCACAGGCAGGGGCCGAGGCCTCTACAGACATTTGCTCGTACTGCCAAACTTTACACAACAATCAGGGATCAGAAGAGGAGTCTGGTGTGTGA

Function

GO: NA

KEGG:

id description
K15694 RNF43; E3 ubiquitin-protein ligase RNF43

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005597 True 2112 mRNA 0.66 7 6151299 6155374

Neighbor

gene id symbol gene type direction distance location
AMCG00005599 NA coding upstream 73573 6073226 ~ 6077726 (+)
AMCG00005600 LOC106603951 coding upstream 105564 6004392 ~ 6045735 (+)
AMCG00005608 NA coding upstream 246660 5901491 ~ 5904639 (+)
AMCG00005609 NA coding upstream 254995 5891753 ~ 5896304 (+)
AMCG00005607 NA coding upstream 269008 5868340 ~ 5882291 (+)
AMCG00005626 mtmr4 coding downstream 50444 6205818 ~ 6229880 (+)
AMCG00005627 vkorc1l1 coding downstream 80260 6235634 ~ 6240612 (+)
AMCG00005634 NA coding downstream 145563 6300937 ~ 6302204 (+)
AMCG00005636 NA coding downstream 185550 6340924 ~ 6343422 (+)
AMCG00005635 ggnbp2 coding downstream 189538 6344912 ~ 6354314 (+)
G153312 NA non-coding upstream 102861 6048130 ~ 6048438 (+)
G153274 NA non-coding upstream 195848 5916835 ~ 5955451 (+)
G153271 NA non-coding upstream 350407 5800648 ~ 5800892 (+)
G153154 LOC106602867,LOC107597455 non-coding upstream 706042 5444379 ~ 5445257 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding upstream 827376 5321060 ~ 5323923 (+)
G153348 LOC107090330,LOC102220786 non-coding downstream 76785 6232159 ~ 6234047 (+)
G153381 NA non-coding downstream 127614 6282988 ~ 6331371 (+)
G153390 NA non-coding downstream 177878 6333252 ~ 6393728 (+)
G153485 NA non-coding downstream 405525 6560899 ~ 6563478 (+)
G153626 NA non-coding downstream 946831 7102205 ~ 7157875 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 909523 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1588279 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 1846143 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 2880455 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 3301691 2845217 ~ 2849608 (+)
AMCG00005647 NA other downstream 279147 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 332344 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 453269 6608643 ~ 6662480 (+)
G153675 NA other downstream 1105303 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 1151684 7307058 ~ 7334571 (+)

Expression


Co-expression Network