AMCG00005600 (LOC106603951)


Basic Information

Item Value
gene id AMCG00005600
gene name LOC106603951
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6004392 ~ 6045735 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005600
ATGAGCAAATCGGCTGCTGAGGAAATACTTCACTGGCAGACGGATCGAGGGGCCTCCACACGTAATTGCCTGGCAAATGAAAACGGCACGGATTATGGGTTCCTGGTGCATCAGAACTCGGAGCTGCTCCGCGCGCTGGACGAGCTGGAGAGGAGCTGCTCCGCCCTACGAGAGGAGAACAGCCTGCTGCGCAAAAGCAGCTCCCCTGAAACGGAGGAGAAAGTGAAGCGGCTGAAGAGGAAAAACGCTGAGCTTGCTGTCATCGCCAAGCGCCTGGAGGACAGGGCCCGCAAGCTGCAGGAGGCCAACCTCAGAGTGGTGAATGCCCCGGCGCCCgtgcggggtgggggggtggagcaGTACAAGCGTGCGTTCGCCAGGCAGCGCGCCCGGGACCTGTCTCTGCACGCCGACACGCTGCTGTCCAAGGACAAGGAGATTGCCGCCCTGCAGCAGGAGTGCCGGGAGCTGCAGTCTCGCCTCGGCACCGGAAAGGCATCCCCCAGTGCGGCGGGCATCGGCGAGTTCGAGAGGCTGCTGCGCGAGTCCCAGAAGGAGGTCCTGCGCCTGCAGAGGCAGCTGTCAGTGTCGTCCGCCAAAGAGCCCCCTGCCCGGAGCGGCCAGGAGAAGGCCAAAAGTGAAACCCCATTGCCAGATGTGGATGAAGCCCCGCCTCGGTGTGAAGAGACCAATGGTTTGGAGGAGCGCAAGTGGAGTGTAGCACCCGAGCCCTGTGCGTCCCGGCCCGCCCCACTCCAGCAGCTGGAAAGTGAGCTGAgcaagaagagaaaagaatgtGAAAATCTCGAGCATGAAGTAAGGAAAAGACAGAAGAGATGTCTGGATCTGGAGAGCGAGCTTGAGCGTGTCCGAGGGACGAATGCACGCCTAGAAGAGGAAGCGGACCACCTGAGGCAGAAGTCACAGCTGCTCAGCCAGGTCCAGGTTGAGAATGACGAGCTGAGGGACACTCTCACTGCGGTGACCGCTCAACGTAATTCAGCTCTCGAGGAGAACCAGAGACTCCAAGCCAAACTGGAGAACCTAGAGCAGGTCCTAAAGCATATGCGAGAGGTAGCTGAGCGACGGCAACAGCTCGAGTTCGAACATGAGGAGGCGCTGACCATCCTCAAGCTCAAACAGGACGAGGTCAAACGGCTACAGAAGGCTCAAGTAGCAGCGAAGCGGGAACATGAGGGTGTTGTGCAGCTCCTGGAGGTGAAGGTACATGAACTGGAGGAGAAATGCCGCAGCCAGAGCGAACAGTTTGGCCTGCTCTCCCACGAGCTCGAGCGCTTCCGCCTGCAGGCCGCCAAGTTTGACCTCCTGACCTCCGGCTCAAGCCCCTCCGACCTCAGCCTACCCTCACAGCTGGCCAATGGAGTGGAGCCGGCCGGAGAGAAAGACGTGGAGGCGTCTCCCCCTGCGGCTGCGCACACGGCCCCACCCGTCGAGCCCCAGAAGCAGGAGCTGCCACCGGTGTCGGTGTCCGTGCCAGTGCCAGTGCCGGTGTCTGAGGTGTCAGTCCAGCACCGGGAGCTGCCGGTCATCAGCACCAAGTCTGAGCCCGCCACCAGCACCCCGAAATCCGGTTCCAAGCACCTTACCCCCAAATCAGAGTCACTGCCACACAGTGCCCCGAAATCCTGCCCCACGCCTGAGGTGGAGGAGTTGGACATCGATGTCTCGCCCGTCCCTGAGCCGGACATCAGAACTCCAGccaagctgcaggtcttcatcGCCCGGTACAGCTACAACCCTTTCGATGGGCCAAACGAGAACCCAGAAGCCGAGCTGCCCCTCACAGCTGGAGAGTACATCTACGTGTATGGAGACATGGATGAGGACGGCTTCTACGaagGGGAACTGATGGACGGGCGTAGAGGGCTGGTCCCCTCCAACTTCGTGGAGCGGGTCTCTGACGACGACGTGCTGAGCTTCCACCCGCCCGAGGCCAGCGACCTCTCGCACAACTCCTACCAGGAGAGCAGCTTCCACAGCAGCAGCGAGAAGCACCTCCGGCTGAGCCTCAACAGCTCTGTGAAGACGGAGGTCTCCACCCCCGAGGAGGAGGCCCTGAGCGGAGTGGGGAAAGTGTACAACCTGCTCCCGAACGGGTTCGATCTGGACATGGAGGAAGTGGGGGATGACACAGTGCCTTACCCAAGGAAACTGACTCTAATCAAGCAGCTTGCCAAGAGCATCATCATCGGCTGGGACCCCCCGCTGGTGCCGGCCGGGTGGGGGAACGTCTGGAGCTATAATGTCTTCGTGGACAAAGAGCTGAGGCTCAACGTTCCATTTGGCTCCCAAACCAAAGCGGTTCTGGAGAGACTGGACATCAACCTTAAAGCCTATCGCGTTTCCGTCCAAAGCGTGACGGAGAAAGGGAACTCAGACCAGCTGTGCTGCAGCTTGCTGGTGGGGAGGGACGTGTGCGTGGCTCCCTCACAGCTCAAAGTGGACAGCATCACGGCAACCTCCGCCAACCTCTCGTGGCTGCCAAGCAACAGCAACTACGTGCACGCCGTATGTGTGAACGAGGAAGAGAGCGAGGTGGTGAAGGCCGGCTGCTACTGCCACTGTCTCAGTAACCTGAGGCCCAATCAGAGGTATAAAGTGAAGGTGGAGGCCCGGCCCCACCGAACTCCATGGGAGTTGCCTCTGGACCGACGGGAACGCAGAGCTGTGGTGACAACATTCACTACTTTGATGGCAGGGCCCCCAGATGCCCCACTGGATGTGCAGGTGGAGCTAGGCCCCTCCCCCGGTATCGCACTGGTCAGCTGGCTACCCGTCACCATTGACGCTGCCGGTACCTCCAACGGGGTCCGTGTGACCGGATACGCCATCTACATAGACAAGCAGAAAGTGTTAGAAGTTGCCTCCCCGACAGCTGGCAGTGCGCTGGTGGGCCCCTCACAGATGCATCTCCTCCAGGTGGCGCAGGAGCTCAGCGTGCGGACCATGTCTCCGTACGGGGAGTCGGCGGATTCAGTGCCTGTCAAAATCCTCACTAAGCTCTTCGCCGCCGTGGCTCCCGACCAGCCCCTGCCAACGCCCGCCAATGCCGGCGACTCCTTGGAGGCTGGCGTCCTCGGTGCTCCGCCGCATCAGGAATCCCTGGTCACCACGACTGCCAAAACCCCCATGCCACTTCCTTCGGTGCTGCAGATGCCCCCGCTAGACGCTCGTGCCACCTCCGAATGGGCCGTCCACGCTGCACCCAAAGCCAATGTCAGTGACGGGGGCAGCCTCCTCCTCCACACGGATGACAGGACGGCGTATTCGGATTCACGGGCGGATTCCCTCCTGGCCGTGACCTCCAGATCCAGCGTTGTCCTGCACGAGGGCTCGTCCGTATCAGACTTCCGTTTAGGCCACACGGTTGATCTCTCTGGGAGCTCAGGTTCTGGCCGACTGTTAGACTCAACCAAAGACTCAGACAGCGCTGGTCTGAAACGCCCGTCCGTCTCCATCACAGACTTCTTGGAGGAGGCCGTGTCCACAGTGGACCCTGGCAGCTCCGTGCTGGAGATGAGCCTGGACTCGTCCCAGGGTCTGGCTGGAGAAGCTGCCGGAGCCATGTCCGAGAGCGCTGAGCCCTTGGCCACCACGGGGGTTGGGCTTGGCCTGGACCCCTTAGGCATGGAGTCGGAGCAGGAGACGGAGGAGGACAGTGCCAGGGCCAGCATGAGGGTGGTGTCCATCGAGGAGTTCCTGGACCACAGCCAGCACCAACAAGGGCTCAGATACATATCCAGCCACCAGGACAGCTACCTGAAGAGACCCAAGGAGGATCATGGGCCGGGCCTGCCAGAACCAGCCACTGACCCCCAACTGAACGAGTACCAGACCGAAAGCAGCCGCGGCTCTGACCTGTCCGACATCctggaggaggacgaggaggatcTCTGCTCCGACATCCCCGGcacagaggagggagaggagctcAGTTCCACACAGGGGGGCAAGCCGGACACGTGGGAGACGGATAGCGACGAGGAAATTTTGGAGAAGATCCTCAAGCTTCCCTTGCAGACCCATCACAGCAAGCAGCTCTTCAGTATCCCTGAGGTCACCGAGGAAGAGGACGAGAGCCAggagctggaggaaggagaaCCGCCGAACACTCCCAAGAGCCAACAGCGAGGCACGGAAGAACGGACTACAAATCCAGAGACATTCAACAGCACAAGGAGGCTTTCAGTGGCCAGAAAACCAGCTTTCCTACCAGAGGAAAACAGCGAGGCAAATGATGGGAAGTCAAATGTCAAATTCAAGGGCTCTGAAAACAGCCTGCTCTTGAACCACAGACTGCACTCGGGTGGCAACTCCAGCAGCGAACGGGGATGCCACCCAGCACTGCTGCCCTTGGAGAAGTCCAGCGAGACTAAAGATCATGGTAGATACAGTGTCCTCAATAGCCGAAGCAAGACACTTCCACACAAGACCCACTTCTCCAACCCGCTGGACGCAGGTGTCAAGGCCTCAAATTACCTGGAGGAGGACTATGACTCTGAAGGTAGCATTTACGTTCATAGCAAGGAGCCCCGAGTGAGGAGGTCCCATGAAAGGGAGCCCAAGATCTCGCACTTCCCCAAGGATAACGCGGACAAGACCGGAGACCGGCTGAGGAGAGAAGCTATGCTGAAGAGCCAGAGGGACCTGATCTCCTCCGAGTTCCTGAAGACTGGCCTGCAGACAGGGAAGTACTGCGGTGCCAAAGGACCGAGAAGAAGCAAGACGTCCGCGGGCAACGGGGTGGAAATCGATATCGAGTACGGAACCGAGGACGATGAGGACGCCCTCCCTTGCGGCCCAGCAGTGGTCCATCTGGGGCAGATGCGTGCGGGCTGGTGGGGGGATGGCACCCAGTCTGAAGGCCAAGACGAGATGAGCAAGTGCTCCAGCCAGTGTGAGTCGGTGGCCTCTGAGGGGCGCAAGAGACAACTGAAGAGGCAGGATGTGTTGGAGGATGAGGTGTTTGACTCTAAATCCCctcatcaccaccaccaccaccaccatcacagCAGGGGAAAAGTGGGCTCTTCTGGGACGTCAGGATCCAATTCGAGTGGCAAAGGGGGTACAGAGGCAGGAGATGGGGCTGTTCGGGGGCAGGATTATCACAAAACGTCTGGCCGGCGGGCAAGATCCGAGCACGGGGCCAAAGGCCATAGCGCTGATGATTCTCAGACAAGGGAAACTGTCGCCAACGGAGACCCTAGGCTCCTGCACCCGGCTGAAGCGGCAGCCTGGCGGGGACTGAACGGCCTCCCACCCAAGATGGAGACCCGACTCGCCAAAGACGCTCCGAGGACGGCCGTGTCAGAAGTCACCGAGTGCTCCGAGGCAGACGGGACGCAGACGGACAGCATGGTGCGCATCTTTGTGGCTCTGTTCCAGTACGACCCCGCCGTCATGTCCCCCAACCCCGACGCTGCCGAGGAGGAATTACCCTTCCAGGAGGGCCAGATCATCAAGATCTACGGTGACAAGGATGCAGACGGCTTTTACCGCGGGGAGTCCGGCGGCCGCTTCGGCTATGTCCCGTGCAACATGGTGTCCGAGATCCAGGTGGAGGACGAGGAGACCAGGGATCAGCTGTTGCAGCAGGGCTTCCTGTCCGCCGAGGCCTCCATGGAGAAAATAGGCACTCGTTCGCACGCACAGCTTCCACGCCGCCCTGTCCCGCCGCCGAAACCTAGACGATCCAAGAAAGTTGAATCTGCTGGTGTCTGGGAGGAAAGTGTAGGCCCGAGTAGAGAGCGCAGTCGCCTGGCCAGCGGACCGCCGAACATGGCATCTCGGAAGATGGTGGCGATCTTCGACTATGACCCGCGGGAGAGCTCCCCCAACGTGGATATCGAGGCTGAGCTGACCTTCAGCGCTGGGGATATCATAGTTGTGTTCGGCGACATGGACGACGACGGATTTTTTTACGGAGACATAAATGGGCAACAAGGACTGGTGCCATCAAACTTCCTCCAAGCCATACCTGAGAACGGGTCGGAGGCTGCTGGGAGTGTCGGAGGAGAAAAGGGGTTTCCAGAAAGCAGACGGGAATCGCAGGTGAGCCTGGCGGTGTCCGAGGAGCAGAACGAATCCACAGCCGCCCCCCTGGAAGAGCCCACGTCCCCCGGCCCTGTGCTCGGCATTGCCCTCCCACAGGTCGTCACCCAGGAGAGCCTGGGGCCAAATGAGACGTCACTGCAGGGCAAGAAGAAAAAGGGCTTCTTCTCCAAAGGGAAGAAACTGTTCAAAAAACTGGGCTCCAGCAAGAAGGAGTGACGCCCTAAACCGCTCGGTCAAACCAAGGACTCCTGGTCTGCGCTGTGGCTCCTCTAACCCATCCATTGATGTTGTCTGTGGCAACCAAACGAGAGGAGCCTCTCGTATCCTTTTGACAGTCCAAGCTTTTTTATGAAATGGAAAGGGGGGAGAGAAGTATTTTTATGGGGGTGGCAGTATTTCTGTATCTCTATCTCCGTGGTTGTGAAGATCCATACTCTAGACCTCTGGTGTTCCTGAGCAGTAAAAAGGTTAATTTGGTATCACCCTCTCGTTTCATCTTTGAAAACCCAGCAGATGACTGTTTAAACGTTTTAAACGGATGactgtttttaagtttaaaagtaATCCTTTTTGCCTTAGGGGAGTGGCATTGCATCTCGAAGAAGGTTGTTTAGTCACATGTAAAGATGTGGACAGGTCATGTTACACGAATTGCACAAAAGGCTTCACTGTGAGTACTCCACATACCTGTGACCTTTGAATTGGGGGGTACTCTTCCAGTTGATCcgattttgctttattttatttgagatgCAGGCGGAATTGATTCCCTGTTTTTGCTCTATATTAGTTTGTATGTAAACGGATTCACTTGCATTGAAggcatttgtgcattttatgaAGTAGTTTTTACTCGGTTGCCAGAATAGTGCATGGTCTTGTAGCTGAAACTGTAAAACGGATGTTCTAAGTTGGTGTCTGCAGATCTGACTGCATTGAACACTGCAGCAATATTACAtgctttaaactgttttttttgcaGAGATTTTAACTGAAACTGCAGTCTTTGCCTTTcggttttttagttttttagtttttttttttacctggaACTCAGTCTATTTTAGCGCTGGTTAAGGCATTTGATTAGCTTGATTTTGGATTCCGAAGCTGGAAGATAGGCGCCTAATTATTTGGTTAACAGCATGGGGCTTAATTGTAAAAGGAAATGCTACAATTAAAACCCTGGCTTTCATCTCCTGCGACGGATCCGCAAGTCCGTGTTCGTGCATCTCAGCTGGCTCTCCCTCGGCTTGACAACGAGCTgcacatactttttttttttttattattattattttttttttatgttataaaaatacaaaactctCTCCGTTTTAGGAGCCCGGCCTCTTGGACACGATGCTGTATCGGCTCCCATGTTGAGAGACTTAGGGATGTGCGGTGCAGCTGCCAAGGAGGCGCTCGTTACGCATGAATAGTGTAGCCGGGAAACGTCTGTTTGGTGTTATTTATAAGTTTTATTGGACATTATGCAGTAATTTATATTGAGTAAAAGCGGAAGTGTTAGCTTTCCTTAGCGTTATTACTCGTCTGAGATTCACCCTGGGTGGTGGATTCACTTTCTCGGCAAAGGTCAGCTCTCAGGATTAAGCTATGGATTTCAGCCCCGCTCCGGCGGCGCTGGCGTATTTGTACTTCTTCAAAAGACAAAAGGAGTGGGACTCATGCCAAAAGTTAGTCCTTATTTGCTAACATGTCTACAGCAGACAAACACTGCGTTAATGCTACATGATGGCATGACTGCCTGGCTACGCGGACCTCGCATTGGGAGGAGGagcatttatttctgttttgttttgtttttcgaaAAAGGGCTTTGCAGGATTGTActactgaaaatgaatgtttttcCATCATTTGCGTTTTCTGATTGATCTGCATCTATTCTTTGAAGGGATGGAATGGCTGGtgaattactttaaaaagcCTTGAATGGTTGCAATTCTACTGTAGGTAACAGACTATaaccttttactttttaatgtatatgaatataaagGAGACAGTCACTCAATtttgacaaaacaaagaacaaaagacACACATGCAGTATTTCAAATCCTCAGTTTAGGTTCACCTGCTTCTTGTGGCCTTTAGTGTCCAATGGTCCCACCTACCCCGTGTCCTTGAAGGAAGTAACCAAAGCTGGGTCAATAAATGTGTGATGCCCTGCTGTGAAATAGGACTTCACTGTTAGTCCCTTAGAAAGTACAGTAGACAGCAGCCGATATAATGTAGCCTTACATGACCTCTGTTAGTCTTAAATTGTTGTTTACTCTATACTCTGCATGCATAATGTTGTTATACCCATATTTTGCCttatttattactatatatattatttatacttgTATATTTATTGAATACCTGGCTTcttgtttgcattattttgtatgacTTTTCGTTTTCCCAGTTTGTAAAGGCAGTGGTAGCCAAGTAGAGAGCATGTAAGCTAAAGAAGTCCTCGACCTTTATATATGACTGGTGTATCAAGGGTCACACTTCTGTTTTGACTTTTAGAAGTCTGTTGCTTTCATACAGGGagacaaacattatttttattttttttgttttcctcattgcTGTAAACATTCTTTATAAGACTAAAACTGGTTTTGTACAGTACGGTTTTTACGACCTGTTTTGGAAGCTTGTATGTAAATAAGacatcctttttttgtttttcttgttctttttgcaTGTTTCATGAAAAAGCAGTTTCCGAATAAGAAACTTAGCGGTGGAATTCATGCACAGAGGCGTTGACTTGAAGGAGGGAAGGTGTCTTTCaatatggggggggggaatctttttacaggaataaaatatattttcacataaaa

Function

NR:

description
PREDICTED: peripheral-type benzodiazepine receptor-associated protein 1-like isoform X5

GO: NA

KEGG:

id description
K19922 BZRAP1, RIMBP1; peripheral-type benzodiazepine receptor-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005600 True 8945 mRNA 0.54 30 6004392 6045735

Neighbor

gene id symbol gene type direction distance location
AMCG00005608 NA coding upstream 99753 5901491 ~ 5904639 (+)
AMCG00005609 NA coding upstream 108088 5891753 ~ 5896304 (+)
AMCG00005607 NA coding upstream 122101 5868340 ~ 5882291 (+)
AMCG00005594 NA coding upstream 157908 5845595 ~ 5846484 (+)
AMCG00005595 NA coding upstream 202336 5785094 ~ 5802056 (+)
AMCG00005599 NA coding downstream 27491 6073226 ~ 6077726 (+)
AMCG00005597 NA coding downstream 105564 6151299 ~ 6155374 (+)
AMCG00005626 mtmr4 coding downstream 160083 6205818 ~ 6229880 (+)
AMCG00005627 vkorc1l1 coding downstream 189899 6235634 ~ 6240612 (+)
AMCG00005634 NA coding downstream 255202 6300937 ~ 6302204 (+)
G153274 NA non-coding upstream 48941 5916835 ~ 5955451 (+)
G153271 NA non-coding upstream 203500 5800648 ~ 5800892 (+)
G153154 LOC106602867,LOC107597455 non-coding upstream 559135 5444379 ~ 5445257 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding upstream 680469 5321060 ~ 5323923 (+)
G153113 NA non-coding upstream 695301 5307945 ~ 5309091 (+)
G153312 NA non-coding downstream 2395 6048130 ~ 6048438 (+)
G153348 LOC107090330,LOC102220786 non-coding downstream 186424 6232159 ~ 6234047 (+)
G153381 NA non-coding downstream 237253 6282988 ~ 6331371 (+)
G153390 NA non-coding downstream 287517 6333252 ~ 6393728 (+)
G153485 NA non-coding downstream 515164 6560899 ~ 6563478 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 762616 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1441372 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 1699236 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 2733548 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 3154784 2845217 ~ 2849608 (+)
AMCG00005647 NA other downstream 388786 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 441983 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 562908 6608643 ~ 6662480 (+)
G153675 NA other downstream 1214942 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 1261323 7307058 ~ 7334571 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G372111 NA non-coding CI01000171 null 363649 ~ 379605 (-)