AMCG00005603 (dhx33)


Basic Information

Item Value
gene id AMCG00005603
gene name dhx33
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5737790 ~ 5744821 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005603
GGAAAGCGTGGGACAGGAAAGTGAAAGAGCGGCTCAAAAGAACTGGCACGTTTTCTGGAGGCAGcgttttgatttctttttttctttttatttcttccctccCAGTGTCGTACACTGCCCGATCACGCCACACGGGACTTTTCTCCTGTCTGTGTGCTTTTCTAGATCATGCCCCAGGACCCCGATCCTCCTCCGGCGAAACGATTCAAGCCGGGGTCGCCCTTCTTTTGCCTCAATAAGAAACCTGGCATGCTGCTGCCCAGAAAGGGGAACACATCTGTACCGATAGAGTTACAGCGCAGACATCTGCCCATTTACCAGGCAAAGTCCCAGCTCATCAACCAGCTGAGGCAGCTACACAACGCGGTCCTCATAGGCGAGACGGGTTCTGGAAAGACCACGCAGATCCCCCAGTACCTCTATGAGTGTGGCATCGGGCGCCAGGGCATTGTGGCCATCACCCAGCCACGCCGGGTGGCAGCAATCTCCCTTGCTGGCAGGGTGgcggaagaaaagaaaactcaacTGGGAAAACTGGTGGGCTACACTGTCCGCTTCGAGGACGTCACCTCCCCGGAGACCAAGCTGAAATTCATGACGGACGGCATGCTGCTGCGCGAGGCCATTGGGGACCCGCTGCTCCAGAGGTACACCGTGGTGATCCTGGATGAGGCCCACGAGAGGACCGTGCACACCGACGTGCTGTTCGGGGTGGTGAAGATGGCCCAGAAGAAACGCAAGGAGCAGAACAAGTACCCCTTGAAGGTGATCATTATGTCGGCCACAATGGACGTAGACCTCTTCTCGCAGTACTTCAACAAAGCTCCGGTTCTCTACCTCGAGGGGAGGCAGCACCCTATCCAGATCTTCTACACCAAGCAGCCGCAGTCAGACTACCTCCAGGCGGCGTTGGTGTCtgtctttcagatccaccaaGAAGCTCCCCTGTCCCACGATATCTTGGTGTTCCTCACCGGCCAGGAGGAGATCGAGGCCCTGGCGAGAACCTGCAGAGACATCGCCAAGCACCTGCCCGAGGGCTGTGGGACCATGACCGTCATCCCACTGTACGCCTCTCTGCCCCCAGTTCAGCAGCTCCGGGTCTTCCAGCCCGCACCCAAGGGCTCCAGGAAGGTCGTCCTCTCTACAAACATCGCAGAGACCTCTATTACCATCTCTGGGATCAAGTTTGTCATCGACACCGGCATGGTGAAGGCAAAACGTTACAATCCAGACAGTGGCCTCGAAGTGCTGGCAGTCCAGCGGGTGTCCAAAGCCCAGGCCTGGCAGCGGGCTGGCAGGGCCGGCCGCGAGGACAGCGGGGTGTGTTACCGCCTCTACACCGAAGACGAGTTCGACAACCTGGCCAACGTGACCGTGCCCGAGATACAGAGGTGCAATCTGGCCAGTGTGATGCTTCAGCTGTTGGCGTTGAGAATCCCAGACGTTCTGAACTTTGACTTCATGTCCAAACCGTCCCCAGAGGCTATCCGGACAGCCATAGAGCAGCTGGATCTATTGGGAGCCGTGGAGCGCCGAGACGATCAGGTCATTCTGACTCCATTAGGGAAGAAAATGGCCTACTTCCCTCTGGAGCCCAGGTTTGCCAAGaccATCCTCCTGTCACCGGATTTTTCCTGCACAGAGGAGGTGCTGACCATCGTGTCCCTGCTGTCGGTGGACAGCGTCCTCTACAACCCACCCGCCCGGCGGGAGGAAGTCCACTCAGTGCGCAGGAAGTTCATCTCCAATGAGGGGGACCACATGACCCGTCTCAACATCTACAGAGCCTTCAAGAACGTGGGTGGCAACAAGGAGTGGTGTCGAGAGAACTTCGTCAACAGCAGGAACATGGGGCTGGTGTCAGAAGTCCGCTCCCAGCTCCGAGAGATCTGCGTGAAGCTGGGGATGTCCATGGAGTCCTCCCGCACCGAAACGGGCAATATCCGTCGATGCCTGGCCCACGGGCTCTTCACCAACGCGGCCGAGCTGCAGCCCGACGGCAGCTACACGGCCCTGGACACCCACCAGCCGGTGGCCATCCACCCCTCCTCGGTGCTCTTCCAGGCCAAGCCGGCCTACGTGGTCTTCAATGAGCTCCTGCACACCTCCAAGTGCTACATGCGAGACCTGTGCCTGGTGGACCCCGAGTGGCTGCACGAGGCCGCCCCCGAGTACTTCCGCCGGAAACTGCGGGCTGTCAAGAGCTAACCACGGTCGTCTCGAGCTTCTCTCTGCGCGTTTCGCCAAAAATAGCACAGAAGACACGTCTGCAAAGAGTCACGGCCTCCTGTAGTTTTCCCCCCGTGCGCACCACATGAGAGCCTCACCTTTTTGTCCACcccttgttttttcttttacttacCAGTGACCAGAATTGCAGGACAAACAAAGCACCTGACACTGAGGATGGATACTGGAAGTTGGAGATGCTCGGGAATTCTGTCTGTGTGGCGTTCGGATCGGGAACCATAGGTTGAGTCTCAGACGGGAAGCTAAAGAGCTCGAACCTGGAGGCGTCCAATGTGTGGCAGTAAAGCTGACTATTGTGAAGCTTATTCCAGGCTGAAAAATATGTGGCCCTTAACTCTGTGTAACTGTGTCTCAACGAAGGTCATCCGTCTGTATgggtgacctctgacctctgcttCACTGAGCCTTTTGTGGCATCTCagatctctctatctctcaggGGGAAATCGGCAGCAGGTGACCACCAATCATATTGAATAtcttatgaagaaaaaaatggttGAATTCTGCTGTCAGAGATGGGGAAGGGATGGCTCTTATGTGGATTCAGTAAAGTCCCATCTGAAAGTCTCTgtgacaaacaaaaagaaatacagatgaTGTTTGACACACCAAGCGACTGAGAGGCAGAGCTTTCACCCTAAACAGGATGTGGCTTGTGAGTCTGATTTCAGCTTACAGTTTGGCTACTGTAGCTTTCAGTTCAAAAGTTTCTTAATGGAGTTTTTCCACTGCTCTATATTTGACAAACTCAAGTATATCAACACTCGATCCTCTATgtctaagaaaacaaatattcgACTGTTGAATAAAAGCAAGCCTGTGTGCATGCATTTCTTCCCTGATATATTGCAAGAGTCACAAACCCTGACACAGCTTCCTTTCCAAATGGAAGACTTTAGCCATGGCTCTCGGTGGCTTTGTTGTCAGTCAGAAATGGCCAGGTTGGCCATTTTGCCCTCATCCTAGCCCTATACCACAAGATACAATAGAATTGGGACTCCATGAAAGATTAGCCACTAGAAGACTAATTAACCTAGAACCAACTAGCATCTGCTGTCTTGAGGCATTTGTTGTGTTCAGTCATTGTGGTAGACCGAAGCAGGTTTTGGGGGCAATTCCACATTGAGAGAGCTATAGGACTACTTCACCCTGTTTTGTGTTCCACAATTAACACTCAACTGCAAACGATAAAGTCTTTAAATCTTTAACTGCATGTCATCTTGCACTTTATGTGGCTAAACTTCACTAGTTTCACACTGACCAGAATTCACACGTGGTGCTGGACCACAATGACATCACACTGGTCCTTAAATAGACTAGGGACATCTCTGGTATTAATTTACCTTTTGTATCTGTCAGGCACTGTTAAACAATACTAGCTTAACCATGTAAAGTAGTATTAGAGAGGTATGCACTGCATGGagttacagtgaaaataaattacacaattcCTCAGGTTTTTCACTACACTGTATCTGAATTGGAGAACTGGTATGTTGTGTTACAAGGTGTACATTGTCGGTGGTAAACACTGATTTAAGCCTTGTTAGGCGGTGTTGATTGGGATTATTTAGGTTTCCTAATTTACTTCTACGAAAGCTTTTTCCCCTTCTCAAGTTTCATGTTTAAGTTAGGAGTCAGTAGACAAAATTGTACAAAAGCCTAGTTTCTCAGCTATCATACTAATCAGATACGTTTACTCTCTTCTCAATCAGTGGCAGTACGTTCCGTAAACTTCACGTCACATTTTACGTTTTCAGATCCTAAACCTTTCATTGTAAAAGTAAGGATTCATATCTCTTACAGCAAAGCAGGTCCAGTAATAAATCTCAGGACTCAAaccttctattattattattattttggattacttattttattattaaaatgatataagTAATAGTGAAAATATAGTTGAAGAAGCAGGGATAACACAATCTGTTTACAACGTGACTTAgaatgtttgtaaaatgtttacaaggCCACAAGGTCATTggagtacattttttaaatcattaaaagccAATGTAAATAGTTAAGACTTTAACAAACCATCCTTTGTGTTCTTCGtacaatgaaattaaaagaaaaatgactgcAAGTGAGTTTAATATCCCTGCAGTTAcgcattggttttatgttttttcagcATCCACCTTGATACACGTTCAGCTGATTAAGTAGAAAAGAGCAGAATGGATTTACTCTAGggaattcaaatgtattaaaattatatctctattattttttttacaataaaaacaacaggaatACACTTAGTTGGCCTGTGTATCTTGTAATTTAACAAATCTAATAATCTAATTTGACAGCAGTTTAAAGTTGCAGTTATAGTAAATATTGTTTGGACCCatcctgttttatttgtttttctgtggttaTAAAATGGGGCTAGCTGTCCTGAACAATGTACACAGGGTGTTTTGAAAGTGTGATGTGAAATGACTTTGTAATTGGAAAGGCAGgttctgtatattttgtataaaataaaccacagccAGCACAAACTAGAAGCCTATGAGACCAGGGGGGACTTTATGGGTATATAAAAGTGTTATGTGGTTTGAAAAAACAGTAGTGAATGATGTAAGAGTTTGTAAAATATagcatttataataaatactatttCCACACCATCTGATTCTACACTTTATTATGCGTTaggtttgtgtttatgtattcgtaactgcatttacaaaaatagTGCCCCCCAGTGGTGGGGTCTGGTGCTGTTGTGTCCATGATTATGTGCTCTTTCTCTCCAGGTTTTATTcttataaaaaacattatattcatACATGGTTTTATTCTTAGATATAGAATCGCTAGATCGCACCAGCCTATGCAAGCTCTATGAGGGTCGGTATGTAAGCTGGTGGCCATATTGCCCAGGGCTGGGAGTACAGTGCCTATAACGCAACAGATGGAAGTGGAGATACAATAGAGGTGTTCATTGTTG

Function

symbol description
dhx33 Predicted to enable RNA binding activity. Acts upstream of or within regulation of transcription by RNA polymerase I. Predicted to be active in nucleolus. Is expressed in central nervous system and digestive system. Orthologous to human DHX33 (DEAH-box helicase 33).

NR:

description
PREDICTED: putative ATP-dependent RNA helicase DHX33

GO: NA

KEGG:

id description
K17820 DHX33; ATP-dependent RNA helicase DHX33

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005603 True 5233 mRNA 0.47 12 5737790 5744821

Neighbor

gene id symbol gene type direction distance location
AMCG00005589 NA coding upstream 70922 5648461 ~ 5666868 (+)
AMCG00005590 atp2a3,LOC102312511 coding upstream 97854 5626706 ~ 5639936 (+)
AMCG00005592 atp2a3,LOC106567410 coding upstream 120681 5612644 ~ 5617109 (+)
AMCG00005591 atp2a3 coding upstream 133269 5595171 ~ 5604521 (+)
AMCG00005593 NA coding upstream 144608 5577417 ~ 5593182 (+)
AMCG00005602 NA coding downstream 636 5745457 ~ 5747836 (+)
AMCG00005604 NA coding downstream 7716 5752537 ~ 5772059 (+)
AMCG00005596 NA coding downstream 31693 5776514 ~ 5784334 (+)
AMCG00005595 NA coding downstream 40273 5785094 ~ 5802056 (+)
AMCG00005594 NA coding downstream 100774 5845595 ~ 5846484 (+)
G153154 LOC106602867,LOC107597455 non-coding upstream 292533 5444379 ~ 5445257 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding upstream 413867 5321060 ~ 5323923 (+)
G153113 NA non-coding upstream 428699 5307945 ~ 5309091 (+)
G153082 NA non-coding upstream 536255 5195788 ~ 5201535 (+)
G153080 NA non-coding upstream 546994 5190527 ~ 5190796 (+)
G153271 NA non-coding downstream 55827 5800648 ~ 5800892 (+)
G153274 NA non-coding downstream 172014 5916835 ~ 5955451 (+)
G153312 NA non-coding downstream 303309 6048130 ~ 6048438 (+)
G153348 LOC107090330,LOC102220786 non-coding downstream 487338 6232159 ~ 6234047 (+)
G153381 NA non-coding downstream 538167 6282988 ~ 6331371 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 496014 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1174770 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 1432634 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 2466946 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 2888182 2845217 ~ 2849608 (+)
AMCG00005647 NA other downstream 689700 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 742897 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 863822 6608643 ~ 6662480 (+)
G153675 NA other downstream 1515856 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 1562237 7307058 ~ 7334571 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location