AMCG00005608


Basic Information

Item Value
gene id AMCG00005608
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5901491 ~ 5904639 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005608
ATGTCCGAGAGACGCATTCCGTTCACCTTCCTTCACAGTCCAAGCTGGGACCCCTTCCGGGACTGGTACCAGGGCAGCCGCATCTTCGACCAGTCCTTTGGCATGCCGGCCATCCCTGAAGATTGGTACCACCACTGGCCCAGCACCCACTGGCCGGGCTACCTCCGCACCCCATCGGTGACAGGCCCACCTCCCGAAGCTGGGGCGGCGGGGCCCATGAGCTCATTCCCAGTGATGCCCCCAACGCTGTCGCCCTACGCCCGACAGCTCACTCGCCAGCTGAGCAGCGGGATCTCGGAGATCAAGCAGACCCCAGAGCAGTGGAAAGTCAGTCTGGATGTCAACCACTTTGCCCCTGAGGAGCTGGTGGTCAAGACCAAAGATGGAGTTGTGGAGATCAGTGGCAAGCATGAGGAGAGACAAGACGAGCACGGCTTCATATCGAGATGCTTTACCCGAAAATACACGCTGCCGTCCGGAGTAGACGCGGAGAAGGTGGTGTCCTCCCTTTCTCCGGAAGGTGTGCTGACCGTGGAGGCACCGCTGCCCAAGCCAGCCATCCAGGCAGCTGAGATCACTATCCCAGTCACAATGGAGGGCAAGCCCAAGCCTGTCGCCGAGGCCAAGAAATAATcagcaagaaagaaaagggcACCGCAATCGCACGTGTGCAGTTCATGTAGGATACTTACCCATATAGCAACTACCACATTGTGTAACAGAAATCCTCGCttcctttccttctttctttctctttttcttttcttcgaTTCGTTATCAATTCCCCAATTAAAGAACCCTGCCTCGCCTAGTAAACTCCGTATCATTTCTCCACACGGGTTTGCAAAGCCGCCATATGCTGTTTTTGCAGTAATTATATTCttcatttgaataaaaacaaaaaactcaaattattccccctcccctccaccaCGGCTGCTATTATTTGCTTGCGGAGCTCTGCAAGCAATTAGATTCGCCTGGTGCATCAATATTGTCAGCCCCCTATTACAGCGTTGTACGTCTCTGCGATTGCACCGCCGTTTGTGTGTATCAGCCACGGCTAACATTTCAACTCAGGTTCCCCACTCAGACATAACATCTGCAAGAAACGTGATTCCAGTCATTCGTGCTGAACGTGAGAGAAGGAACTTGTCTGTGGGATAACGAAATGCAAATGGCATTCATAATAGCCGAACTGAACAGTTGATTcaattatttcatacatttgctgacctttaagaaacaaaaatccgGCTTTCAGTATTtgtctctgtctttttttatgtagAAAATGCTGAAGAATTGCTTTCCCAAAGTGTCTAACAGGCTTTATTTTTGAGCTGTTGTACTGATAAGTACTTTGCCCAATGTTACCATATTCAATGGTGTCTTATCTGAGGCTTTTATTTCAGAACAGATAATAGGCAAAAATGCTTTTAGTGCTGAATTGTTATATTGTGTGGTAATTACTATTCATGGTTTTTATTCTGCATAGTTTTTAT

Function

GO: NA

KEGG:

id description
K04455 HSPB1; heat shock protein beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005608 True 1505 mRNA 0.48 3 5901491 5904639

Neighbor

gene id symbol gene type direction distance location
AMCG00005609 NA coding upstream 5187 5891753 ~ 5896304 (+)
AMCG00005607 NA coding upstream 19200 5868340 ~ 5882291 (+)
AMCG00005594 NA coding upstream 55007 5845595 ~ 5846484 (+)
AMCG00005595 NA coding upstream 99435 5785094 ~ 5802056 (+)
AMCG00005596 NA coding upstream 117157 5776514 ~ 5784334 (+)
AMCG00005600 LOC106603951 coding downstream 99753 6004392 ~ 6045735 (+)
AMCG00005599 NA coding downstream 168587 6073226 ~ 6077726 (+)
AMCG00005597 NA coding downstream 246660 6151299 ~ 6155374 (+)
AMCG00005626 mtmr4 coding downstream 301179 6205818 ~ 6229880 (+)
AMCG00005627 vkorc1l1 coding downstream 330995 6235634 ~ 6240612 (+)
G153271 NA non-coding upstream 100599 5800648 ~ 5800892 (+)
G153154 LOC106602867,LOC107597455 non-coding upstream 456234 5444379 ~ 5445257 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding upstream 577568 5321060 ~ 5323923 (+)
G153113 NA non-coding upstream 592400 5307945 ~ 5309091 (+)
G153082 NA non-coding upstream 699956 5195788 ~ 5201535 (+)
G153274 NA non-coding downstream 12196 5916835 ~ 5955451 (+)
G153312 NA non-coding downstream 143491 6048130 ~ 6048438 (+)
G153348 LOC107090330,LOC102220786 non-coding downstream 327520 6232159 ~ 6234047 (+)
G153381 NA non-coding downstream 378349 6282988 ~ 6331371 (+)
G153390 NA non-coding downstream 428613 6333252 ~ 6393728 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 659715 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1338471 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 1596335 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 2630647 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 3051883 2845217 ~ 2849608 (+)
AMCG00005647 NA other downstream 529882 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 583079 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 704004 6608643 ~ 6662480 (+)
G153675 NA other downstream 1356038 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 1402419 7307058 ~ 7334571 (+)

Expression


Co-expression Network