AMCG00005613


Basic Information

Item Value
gene id AMCG00005613
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5356203 ~ 5360923 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005613
ATGGGTGAACTTGAGAGATCAGTCACAGCAACACAGTGTTTGGCGCTGCTCCTGTGTCTTGTAGCCGTGTGTGGGCTGACGGTGAACGCCAGAGAAGTGTGCGGGGCGTCAGATTTCAGTTTATGTGGGAATTACACTTTGGGAGCACTGTTTCAAATCCATGTTGCTCGCATTAACACTGCGTACAACAGGCCAGAAGTACTGCAATGCCACCAATATGAGTTTTCTCCTTCAGGCTATCAAGAACTGCAGGTCCTCAGGTTTGCCGTGGAGGAGATCAACAACTCCACCAGCCTCCTCCCCGGTGTGTTTTTAGGCTACGAGGTTTTTGATTATTGCTCTAACTTCCTCAACCTTGAGGCAATCATCGACTACATTTCCGTGCGCTCCACCGGATCTGTGCAAGTGCCGAGATATTACATCGACTACCAGCCCAAAGTGGAGGCTGTAATCGGCACATCTGTCAGCTCCAAGAACCTGGTGTTCACGCCGATCTTCGCGCCCTACCTCCTCCCTGTGCTCAGTCACGGGGCGTCAAGCATTCGGTTGAGCACCAGAAACCTCTACCCCTCGCATTTCCGCACCATCCCCAGTGACAAACACCAAGTGCAAGCCATCCTGCGGGTTTTGCAGAAGTTCAAGTGGAACTGGGTCGCGCTGATCGGCGACGGCAACGACTACAGCAACGACGGCCTGCAGGCTCTGAAGCAGCAGGTGGACTCGTTTGGCATCTGCGTGGCGTACGAGGCTATAATCCCGCAGGAGCCAGCCGCTGTGACCAACCTGTTTTCCAACATCACCTTCTTAAGGATCAACACGATCGTGGTGTTTGCCAGTACGGAATCCGCCGTCTCTTTCATCCAAGCAGCCATCGCTCACAACGTTTCGGGTAAAGTTTGGATCGGCAGCGAGACCTGGTCTTTAAACCGACAGCTGCTCATGGATTCCAAAATCCAGACAATCGGCACGGTCATAGGGATAACCATCACCATCGTTCCTCTGCCCGGCTTCAGGGAGTTTGTCCTGCGATCCATGGCGCAGAGCTCTCGGGTGGCGTGTATAAACGTGGCACAGGAGGACCGAGAAAGATGTAACCAAGAATGCCTGCTCTGCTCTAAAGCAAACCCCGAAGACATTGCGGCAGAAGACCCCATGTACAGTTTCAGCATTTACTCAGCTGTCTATGCATTTGCCCATTCTGTGCACTCGTTGCTGGGATGTGACAACAATGGATGCCAGAGGTCTGGGCAAGTTCTTCCCTACATGATCTTTTCACAACTGAAAACAGTCAAGTTCGACCTGCTCAATTACACGGTGCAGTTTGACGAAAATGGAGACCCGCCCCCCAACTACGAGATAGTGGTGTGGGACAAGAGCATGCCTCAATTATACAAGACGATCGGTTCATATTCAGCAGATCCGCAGAATCCTTTCATTCTGGATGAAAAGCTCATTCGCTGGCACACCAATGGAACGGTCCCCATATCCGTGTGTTCGGTGGAATGCAAGACAGGCTACAGGAGGAAAACAGCTGGAGTTCACCAGTGCTGCTTCGACTGCGAGATCTGCGCTAATGGGACGTACCTCAATATCACAGCCGACCCCTACACCTGCAAGGAGTGCCGAGAGGATGAGTGGGCCGACCCCGGGAGCACGTCGTGTAACAAGCGGACCGTGGAGTACCTTCATTACGGCGAGACCCTGTCTGTCCTGGTCTTGATGTCCGCGGGGACGCTGTTCACTCTGTCGGGGGCCGTGGCCCTCGTCTTCGCCCTGCACTGCAACACTCCGGTGGTGAAGTCCGCGGGGGGGAACATGTGCTTCTTCATGCTGGGCTGCCTGAGCTTGTCCGGTCTCAGCATCTTCTTCTACTTTGAGCAGCCCCGGTGGGAGAAGTGCATCCTGCGCAACCCCATGTTTGCTGTGTTTTACACTGCCTGCCTCTCCTGCCTGGCTGTGCGCTCCTTCCAGATCGTGTGCATCTTCAAGATGGCCTCCAAGCTGCCCAAAGCCTACGACTTCTGGGTCAAGAACCACGGGCAGTGGCTGGCGGTCGTGACGATCACCAGCCTCCAGGCCCTCCTGTGCGCCGTCTGGATCGGCACCAAAGCCCCCCAGCCGTTCAACAACACCAGATCCTACAAGGACCAGATCATCTGCGAGTGCGACATCGGGAACCCATACGCCTTCTGCTACGTCATCCTGCTGAAGCCCGAGCACAACACCCCCGCCCATTTCCAGACCTGCATCCAGAGCTACACCCGCAACATCAGCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005613 True 2277 mRNA 0.55 7 5356203 5360923

Neighbor

gene id symbol gene type direction distance location
AMCG00005614 ruvbl2,LOC105888489,LOC107664527 coding upstream 502 5348831 ~ 5355701 (+)
AMCG00005615 NA coding upstream 16472 5325687 ~ 5339731 (+)
AMCG00005612 NA coding upstream 44905 5310270 ~ 5311298 (+)
AMCG00005584 nup88,LOC106603451,LOC106567676 coding upstream 77678 5270397 ~ 5278525 (+)
AMCG00005585 NA coding upstream 144866 5208800 ~ 5211337 (+)
AMCG00005624 NA coding downstream 105225 5466148 ~ 5475647 (+)
AMCG00005621 UBE2G1,ube2g1a,ube2g1,LOC107597432 coding downstream 118585 5479508 ~ 5489570 (+)
AMCG00005623 ankfy1 coding downstream 132261 5493184 ~ 5508150 (+)
AMCG00005622 zzef1,LOC107598082 coding downstream 153117 5514040 ~ 5547029 (+)
AMCG00005593 NA coding downstream 216494 5577417 ~ 5593182 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding upstream 32280 5321060 ~ 5323923 (+)
G153113 NA non-coding upstream 47112 5307945 ~ 5309091 (+)
G153082 NA non-coding upstream 154668 5195788 ~ 5201535 (+)
G153080 NA non-coding upstream 165407 5190527 ~ 5190796 (+)
G152943 NA non-coding upstream 821379 4532321 ~ 4534824 (+)
G153154 LOC106602867,LOC107597455 non-coding downstream 83456 5444379 ~ 5445257 (+)
G153271 NA non-coding downstream 439725 5800648 ~ 5800892 (+)
G153274 NA non-coding downstream 555912 5916835 ~ 5955451 (+)
G153312 NA non-coding downstream 687207 6048130 ~ 6048438 (+)
G153348 LOC107090330,LOC102220786 non-coding downstream 871236 6232159 ~ 6234047 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 114427 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 793183 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 1051047 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 2085359 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 2506595 2845217 ~ 2849608 (+)
AMCG00005647 NA other downstream 1073598 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 1126795 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 1247720 6608643 ~ 6662480 (+)
G153675 NA other downstream 1899754 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 1946135 7307058 ~ 7334571 (+)

Expression


Co-expression Network