AMCG00005648 (fam222b)


Basic Information

Item Value
gene id AMCG00005648
gene name fam222b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6467610 ~ 6476823 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005648
GTGTGAGGAGGAGCGACTGTCCCATGTTGCATTAGTGCCTCTGTGAAATGCTGGCCTGTCTGCCAGTACCAGGTGACCTCCCCTTCCAGCTTCCTTCTCACACGCAGATGAACACTGGACTTCAGAAATGGGACACTACACAGAAGATGAGATCCGCACAGTATCCAACCCCAGCGGAATTGGATGCTTATGCTAAGAAAGTTGCCAACAATCCACTGACTATAAAAATCTTCCCGAACAGCGTCAAAGTTCCTCAGAGGAAACACATCCGCCGCACAGTGAACGGACTGGACACGTCCGGCCAGCGCTACAGCCCATACCCCTCTCAAGCCAGCGCAAAGGCGGGCCTCCTCGCCATCGTCAAGGTCCCCGTCAAGGGCATCCTGAAGGACTTTGACGGCAGCAGAGCACGTTTGCTCCCCGAGATCATCATGAACCCCCCTAGTGGGCCCTACGCCACACCGAGCACTTTAACCCTCCCACAGActatcccccacccccagggCCTTTCCCGGCCCCAGGCcttacagcagcagcagagcatGTCCCACCAACAGACTTTACAGCAGCAACAGCCGCCCCAGGGCCTGCGGCACCCGCCCAGCATGGCACAGCCACCTGGCCTCCAGCATCCTCAAGGGCTTCCGCCGGCACAGACTCTCCCGCACCCCCCGAACCTGGGCCACCCTCCGCCCGGCATTTTGCTGCAGCAGCAGCCGCCTCCGGGGTTGCATGGGAACAGGAAGATGCCAGACGCTGACGCCCCCCCAAATGTGACCGTGTCTACCTCAACCATTCCGCTGTCCATGGCCGCCAGCCTGCACCAGAACCGGCAGGCCGACCTGAGCAGCATCGTGCACCAGATCAACCAGTTCTGCCAGGCGAGGGCCGGCATCAGCACTACCTCTGTGTGCGAGGGGCAAATCGCCAACCCCAGCCCCATCAGCCGCAACCTGCTCATCAACGCCAGCTCCCGGGTGTCCGCGCACAACGCTCCTGGCCCCCTGCCTTCCTGCGTCCTCAGTGTGGCGGACCAGGCTGCCACCGCTCCCCCCGGGGCCATCCCTCCCCCGGCCATGGCGGCCATGAACAGAGTGCCCCCCGGCTACCACAACGAcatgaagcagcagcagcagcgctcCTGGAACCAGCACCAGCTCGCCCACCTGCAGCACATCTCCGAGGGAGTGCCCGGGCCACACCCCTGCAAACACCCTCCTCGGGACCTCCCTGGGGGCCCAGGCTTCCCCCACAAGACCTTGAACTACCCACAGGAGCTATGCCTGGGCCAGCCCTTCAGCCTGAAGCCACCCGTGGACAAGCCCACGCCTTCCCCGCCTGTCAACGGCATGCCGGGGGCCATGACCTACACCAACGGGCACTACTTTCAGCCCGTGTGGAATAACATCTTGCCAACGCCAAATAGTGACAGCTCTGGGTCCCAGGACCTGGCCATGCCATTCCACGGGGGGCCCTCGGGGGCCTCCATCGACTGCGCCCCTGGCACTCACTACAGAGCCAGTGCTGGGTCCTCCAGCCAGACTAACTTGATGCAAACCATGGATTACTTGGGTGGGGACTTCCATCAGCCGTGCTTCAGAGATCAGAACCTGGGCATGATGGGCAAAATGCACAGGCCCCCCATGAGCCGGGCCCCTGAGCCGGGTGATAATAGAAATACGCATATGCAGCACCCAGGGTACAGATAAGCTACAGCCTTGTCTACATGTTTATTGATCTCTTTAGTCTTAcgttttttaaaaagtttaaatgaataaattaaataagcaacCGCTATGGTTAAAACggaaaaataattaagagaagagaagaataaattaagaaaattaaaagcagtgtttttgttgtcaaTCTTGCAAGTGATCAATTCAACCTTTTCCTCTTTAACAACTAGCGCTTGTGACACGGTAGTGTGACGGCCCTGAAAAAGCattaagaagaaataaaacctCCATTCTCTGTTCCCTGCACCTGCAACTATTGGTGTTTCGGTAATTATTTTACCTTGATCTGTCGGGCTATCACTACAGCTTGTGCTTctgcttgtttttaatctagatatttaattaatacttcATCCATTGTGGAGATTATTTTTactacagtatttaaatgtatgttggcTAGATTTTATCAAAACCCAGTGCTGTTGAATCAAACTTCGACCAGTTTTGCTGAAAACGGCCATTTTCACGTTTACACCTCCATGCTGTTTGTCGGCATACAGATAATTTTGTCGAAGCACTACGGAAATCCATGTATTCAACTGtgacttttatttgtattcctttacCCTTATGTGAGATTCAAATTTTGGGATTTGAGCCTGCATAGGGGCAGACTGTGATGCTAATTTGTACCCCCACATACAAAGACTGTTAAAtacttgatttttttgttttgttttttcgtttAAAAAAATTTGTATCTTTTTGTTAAGGACTATTACATTAATCAGGTCAATGTCAAAGGTAGCAGTTTATCGGTATATTTAatctatctgtatatataatgtacactaACGTCCTATGTGGGGTGCATCAGCCAACGCTCCCAATGTTTGTCCTGCTCCCAGCGGCATTCTGGGAGAATCCATCCTGTTGGCCTTGGCACGATAGCAAGTGCCCTGCAATGAAGTAAATAAGTTAACTGTTGGCTTCACGACTGTTGATATTTGTCCATCCCCATTCGTTCGCGAACGTACAGAGTGGGCAGCAGACAAAGCGTGTGAAGAATTAACTGATTCCGGAGAGGGCGGCGGCGTTCCCGTTGCCCCTCCCCTCGAACAGACGAAAAACTCGACTACTTGAATCCCAGGGATCTGAGAAGCAGGTTGGAAAACACTACTCGTGCGGTAAAACTCCAGACCCCCAGTGATTTGAGTTGAACCAAAACCAACTTCTGTTCTTCGCTGCttgagttgttgttgttgccgtttttatttttcctcctttttgtatttatttatgatcgACATTGTCCGTTCCGCAAGGTTGGCACGTGCTGAAGTGAAGGGATCTTTCAGAGAGGAGAACATTGATCACTTGCAAGTTTGGAGGTAGAAACGGCAAAggcattgtttgttttaatgtacactGGCTTAACTACTATACTACTGTAACTTAAAAAGTGTAATAATTCTGTATGAATGTTGCCTGTTGGTGTGGGTTTGAGTCACGTTGTGTGCAGGAGAATCCACTGTCGCCTGCAGTCCATTTTGCCTCCCTGACAGCCCTTTAAAAAGCCTTAAGTATTTGGTCCTTGGACTTTCCTGAAATGAGCATggtataaaaaggaaaactaaaatcattatttaaagaaataaaaatattaacggcttttttt

Function

symbol description
fam222b Located in nucleoplasm.

NR:

description
PREDICTED: protein FAM222B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005648 True 3366 mRNA 0.51 2 6467610 6476823

Neighbor

gene id symbol gene type direction distance location
AMCG00005649 flot2,LOC103133852 coding upstream 43257 6400618 ~ 6424353 (+)
AMCG00005650 dhrs11,LOC107562199 coding upstream 79117 6376102 ~ 6388493 (+)
AMCG00005637 NA coding upstream 109962 6355933 ~ 6357648 (+)
AMCG00005635 ggnbp2 coding upstream 113296 6344912 ~ 6354314 (+)
AMCG00005636 NA coding upstream 124188 6340924 ~ 6343422 (+)
AMCG00005666 emc6,LOC107553592,LOC107552561 coding downstream 31462 6508285 ~ 6508617 (+)
AMCG00005670 NA coding downstream 44029 6520852 ~ 6527544 (+)
AMCG00005668 NA coding downstream 74881 6551704 ~ 6560667 (+)
AMCG00005669 LOC107676655,LOC107718355,LOC107680877,LOC107553589 coding downstream 91264 6568087 ~ 6570099 (+)
AMCG00005661 ncor1 coding downstream 126162 6602985 ~ 6618586 (+)
G153390 NA non-coding upstream 73882 6333252 ~ 6393728 (+)
G153381 NA non-coding upstream 136239 6282988 ~ 6331371 (+)
G153348 LOC107090330,LOC102220786 non-coding upstream 233563 6232159 ~ 6234047 (+)
G153312 NA non-coding upstream 419172 6048130 ~ 6048438 (+)
G153274 NA non-coding upstream 512159 5916835 ~ 5955451 (+)
G153485 NA non-coding downstream 84076 6560899 ~ 6563478 (+)
G153626 NA non-coding downstream 625382 7102205 ~ 7157875 (+)
G153687 NA non-coding downstream 820311 7297134 ~ 7297381 (+)
G153689 NA non-coding downstream 821331 7298154 ~ 7298512 (+)
G153702 NA non-coding downstream 883561 7360384 ~ 7361317 (+)
AMCG00005647 NA other upstream 30532 6434521 ~ 6437078 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 1225834 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1904590 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 2162454 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 3196766 3266374 ~ 3270844 (+)
AMCG00005667 NA other downstream 10895 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 131820 6608643 ~ 6662480 (+)
G153675 NA other downstream 783854 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 830235 7307058 ~ 7334571 (+)
AMCG00005660 LOC106603524 other downstream 1272360 7749183 ~ 7787871 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009104 fam222bb coding NC_007126.7 CM002899.2 16377263 ~ 16384184 (-)